View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299_2D_low_54 (Length: 442)
Name: NF1299_2D_low_54
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_2D_low_54 |
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Alignment Details
Target: chr8 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 16 - 424
Target Start/End: Original strand, 8092147 - 8092555
Alignment:
| Q |
16 |
caacatgctacacttgcttctttaaagccttcccaaaaatttatgaaacataaaattaacaatgattagtatatatgctcacacataaaactcactacat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8092147 |
caacatgctacacttgcttctttaaagccttcccaaaaatttatgaaacataaaattaacaatgattagtatatatgctcacacataaaactcactacat |
8092246 |
T |
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| Q |
116 |
aataattaatagttttcatgaatgtgtaccatagtttaaaggatacttcatcacttcagaaaatgcactgtagaaatcattgattgaatatttgaatccc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8092247 |
aataattaatagttttcatgaatgtgtaccatagtttaaaggatacttcatcacttcagaaaatgcactgtagaaatcattgattgaatatttgaatccc |
8092346 |
T |
|
| Q |
216 |
tttagctggttctctagcttttgaagcatttttgttagtttattgttgtgtagtcttgccactgctgaaatttcatctatgcattcaccttctgttccat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8092347 |
tttagctggttctctagcttttgaagcatttttgttagtttattgttgtgtagtcttgccactgctgaaatttcatctatgcattcaccttctgttccat |
8092446 |
T |
|
| Q |
316 |
tattgactaacattcttatgctaggatagcagccaaaaggacccaaattaagcaacccaaattttcttccacctaggtcataaatttcctataaataaac |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8092447 |
tattgactaacattcttatgctaggatagcagccaaaaggacccaaattaagcaacccaaattttcttccacctaggtcataaatttcctataaataaac |
8092546 |
T |
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| Q |
416 |
atatcatat |
424 |
Q |
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| T |
8092547 |
atatcatat |
8092555 |
T |
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