View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299_2D_low_57 (Length: 426)
Name: NF1299_2D_low_57
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_2D_low_57 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 5957915 - 5958338
Alignment:
| Q |
1 |
cttgcaacaaggaaaatttggccacatgtatatgaacatcttcaattttttcacatagnnnnnnngcaggaatagtcagtaaattgcagcaatgtactag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5957915 |
cttgcaacaaggaaaatttggccacatgtatatgaacatcttcaattttttcacatagtttttttgcaggaatagtcagtaaattgcagcaatgtactag |
5958014 |
T |
|
| Q |
101 |
tcggtttcagttgtaatgttgcactaattccaagtagttggattaatttgtcgtagttaatgtttaggtagcattttatcctatgtgtacttgttgtatg |
200 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||| |
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| T |
5958015 |
tcagtttcagttgtaatgttgcactaattccaagtagttggattaatttgtcgtagttagtgtttaggtagcattttatcctatgtgtac---gtgcatg |
5958111 |
T |
|
| Q |
201 |
agtatatttgttatatgttcttgatgtgtgatatgtgtctggaagatgatgannnnnnnnaagaggctaaaattgaatatattatcaactcaaaaag-tt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||| || |
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| T |
5958112 |
agtatatttgttatatgttcttgatgtgtgatatgtgtttggaagatgatgattttttttaagaggttaaaattgaatatattatcaactcaaaaagttt |
5958211 |
T |
|
| Q |
300 |
ttttctagcataaggtgtatataggaaagacaaacaaagtcgaaacaatatttacaagaggaaactgtacaaaaaccataaaaaagaaataattatcagc |
399 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
5958212 |
ttttttagcataaggtgtatataggaaagacaaacaaagtcgaaacagtatttacaagagaaaactgtacaaaaatcataaaaaagaaataattatcagc |
5958311 |
T |
|
| Q |
400 |
ctatgcctaacaagataaatgaattaa |
426 |
Q |
| |
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| T |
5958312 |
ctatgcctaacaaggtaaatgaattaa |
5958338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 261 - 413
Target Start/End: Complemental strand, 38154158 - 38154005
Alignment:
| Q |
261 |
aagaggctaaaattgaatatattatcaactcaaaaagttttttctagcataaggtgtatataggaaagacaaacaaagtcgaaacaatatttacaagagg |
360 |
Q |
| |
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||||||||||||| |||||||||| ||||||||||||| ||| |||||| |||||||| ||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
38154158 |
aagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtacataggaaggacaaacaacgtcgaaacaatatttacaagagg |
38154059 |
T |
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| Q |
361 |
aaactgtacaaaaac-cataaaaaagaaataattatcagcctatgcctaacaag |
413 |
Q |
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||||||||||||||| | ||||||||||||| ||||| ||||||||||||||| |
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| T |
38154058 |
aaactgtacaaaaacaaacaaaaaagaaataactatcaacctatgcctaacaag |
38154005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 261 - 413
Target Start/End: Complemental strand, 37929360 - 37929207
Alignment:
| Q |
261 |
aagaggctaaaattgaatatattatcaactcaaaaagttttttctagcataaggtgtatataggaaagacaaacaaagtcgaaacaatatttacaagagg |
360 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||| ||| |||||| |||||||| ||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
37929360 |
aagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtacataggaaagacaaacaatgtcaaaacaatatttacaagagg |
37929261 |
T |
|
| Q |
361 |
aaactgtacaaaaacca-taaaaaagaaataattatcagcctatgcctaacaag |
413 |
Q |
| |
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|||||||||| || | ||||||||||||| ||||||||||||||||||||| |
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| T |
37929260 |
aaactgtacataacgaagcaaaaaagaaataactatcagcctatgcctaacaag |
37929207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 264 - 391
Target Start/End: Original strand, 31686277 - 31686405
Alignment:
| Q |
264 |
aggctaaaattgaatatattatcaactcaaaaagttttttctagcataaggtgtatataggaaagacaaacaaagtcgaaacaatatttacaagaggaaa |
363 |
Q |
| |
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|||||||||| |||||||||| | || ||||||| ||| |||||| |||||||| |||||||||||||| || |||||||||||||||||||||||||| |
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| T |
31686277 |
aggctaaaatggaatatattaatatcttaaaaagtctttcctagcacaaggtgtacataggaaagacaaataacgtcgaaacaatatttacaagaggaaa |
31686376 |
T |
|
| Q |
364 |
ctgtacaaaaaccat-aaaaaagaaataa |
391 |
Q |
| |
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|||||||||||| || ||||||||||||| |
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| T |
31686377 |
ctgtacaaaaacaatcaaaaaagaaataa |
31686405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 1590627 - 1590571
Alignment:
| Q |
261 |
aagaggctaaaattgaatatattatcaactcaaaaagttttttctagcataaggtgt |
317 |
Q |
| |
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|||| |||||||| ||||||||||||||| ||||| || ||| |||||||||||||| |
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| T |
1590627 |
aagaagctaaaatggaatatattatcaacacaaaatgtctttcctagcataaggtgt |
1590571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 292 - 404
Target Start/End: Original strand, 33645711 - 33645826
Alignment:
| Q |
292 |
aaaaagttttttctagcataaggtgtatataggaaagacaaacaaagtcgaaacaatatttacaagagg--aaactgtacaa-aaaccataaaaaagaaa |
388 |
Q |
| |
|
||||||| ||||||| ||||||||||| |||||| | | |||||| ||||||||||||||||||||||| ||||||||||| || | | |||||||||| |
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| T |
33645711 |
aaaaagtcttttctaacataaggtgtacataggacatataaacaatgtcgaaacaatatttacaagaggaaaaactgtacaagaagcaacaaaaaagaaa |
33645810 |
T |
|
| Q |
389 |
taattatcagcctatg |
404 |
Q |
| |
|
||| |||||||||||| |
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| T |
33645811 |
taactatcagcctatg |
33645826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 309
Target Start/End: Complemental strand, 34443927 - 34443879
Alignment:
| Q |
261 |
aagaggctaaaattgaatatattatcaactcaaaaagttttttctagca |
309 |
Q |
| |
|
||||||||||||| |||||||||| ||| |||||| |||||| |||||| |
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| T |
34443927 |
aagaggctaaaatggaatatattaccaaatcaaaatgtttttcctagca |
34443879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 261 - 318
Target Start/End: Complemental strand, 11721846 - 11721789
Alignment:
| Q |
261 |
aagaggctaaaattgaatatattatcaactcaaaaagttttttctagcataaggtgta |
318 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||| |||||| |||||| |||||||| |
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| T |
11721846 |
aagaggctaaaatagaatatattatcaaatcaaaatgtttttcctagcacaaggtgta |
11721789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 40435401 - 40435345
Alignment:
| Q |
261 |
aagaggctaaaattgaatatattatcaactcaaaaagttttttctagcataaggtgt |
317 |
Q |
| |
|
||||| ||||||| ||||||||||||||| ||||||||| ||||||||| ||||||| |
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| T |
40435401 |
aagagactaaaatggaatatattatcaacacaaaaagttctttctagcacaaggtgt |
40435345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 371
Target Start/End: Complemental strand, 11324713 - 11324610
Alignment:
| Q |
268 |
taaaattgaatatattatcaactcaaaaagttttttctagcataaggtgtatatagga-aagacaaacaaagtcgaaacaatatttacaagaggaaactg |
366 |
Q |
| |
|
|||||| |||||||||| || ||||| || ||| |||||| ||| |||| |||||| ||||||| ||||||||||||||||||||||| |||| ||| |
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|
| T |
11324713 |
taaaatggaatatattacgaaatcaaagtgtctttcctagcacaagatgtacataggagaagacaa-caaagtcgaaacaatatttacaaagggaatctg |
11324615 |
T |
|
| Q |
367 |
tacaa |
371 |
Q |
| |
|
||||| |
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|
| T |
11324614 |
tacaa |
11324610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 317
Target Start/End: Original strand, 13390117 - 13390166
Alignment:
| Q |
268 |
taaaattgaatatattatcaactcaaaaagttttttctagcataaggtgt |
317 |
Q |
| |
|
|||||| ||||||||||||||||||||| || ||| |||||| ||||||| |
|
|
| T |
13390117 |
taaaatggaatatattatcaactcaaaatgtctttcctagcacaaggtgt |
13390166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 317
Target Start/End: Complemental strand, 35583655 - 35583604
Alignment:
| Q |
266 |
gctaaaattgaatatattatcaactcaaaaagttttttctagcataaggtgt |
317 |
Q |
| |
|
|||||||| ||||||||||||||| ||||| || |||||||||| ||||||| |
|
|
| T |
35583655 |
gctaaaatggaatatattatcaacacaaaatgtcttttctagcacaaggtgt |
35583604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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