View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299_2D_low_66 (Length: 373)
Name: NF1299_2D_low_66
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_2D_low_66 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 21 - 359
Target Start/End: Complemental strand, 47502933 - 47502586
Alignment:
| Q |
21 |
agtgagaatgccaccaagagcaccagctatggcgtgggtgtggaacactgccatgggatcgtcgattttctttaagaaattaaccttgttgtggagtacc |
120 |
Q |
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| T |
47502933 |
agtgagaatgccaccaagagcaccagctatggcgtgggtgtggaacactgccatgggatcatcgattttctttaagaaattaaccttgttgtggagtacc |
47502834 |
T |
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| Q |
121 |
atcatcgtgtaccatggtatacttcctgatatgaaacccatcaagattgctgcccacccctgcacaactcctattcaaccatgacaaatgttaattgcaa |
220 |
Q |
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| T |
47502833 |
atcatcgtgtaccatggtatacttcctgatatgaaacccatcaagattgctgcccacccctgcacaactcctattcaaccatgacaaatgttaattgcaa |
47502734 |
T |
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| Q |
221 |
ctcgccatttaatgaatgtaa------cacnnnnnnnnnnnnnnnccaatgatgttataagattgaaggtgatc---ataatctttcaactacataaatt |
311 |
Q |
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| T |
47502733 |
ctcgccatttaatgaatgtaattatgtaacacttttttttttcttccaatgatgttataagattgaaggtgatcataataatctttcaactacataaatt |
47502634 |
T |
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| Q |
312 |
taaacagctaaaaccatggttaatcatctccaaattcaagattaatga |
359 |
Q |
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| T |
47502633 |
taaacagctaaaaccatggttaatcatctccaaattcaagattaatga |
47502586 |
T |
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