View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299_2D_low_68 (Length: 368)
Name: NF1299_2D_low_68
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_2D_low_68 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 9 - 350
Target Start/End: Original strand, 25702481 - 25702822
Alignment:
| Q |
9 |
gtgttcttcaacggcaatgcatttgacgggaccggtgtgtcccgtcaaaacggaaagacaaatgtgagcccctctctcgtcgcgcctccacacgcaaaca |
108 |
Q |
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| T |
25702481 |
gtgttcttcaacggcaatgcatttgacgggaccagtgtgtcccgtcaaaacggaaagacaaatgtgagcccctctctcgtcgcgcctccacacgcaaaca |
25702580 |
T |
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| Q |
109 |
ttcttatcggcggaaccactgaaaacaaggttccctgcagcggctagacataggactgcgagtttgtgtccctttaaaacgccaccgtgagtgaggttat |
208 |
Q |
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| T |
25702581 |
ttcttatcggcggaaccactgaaaacaaggttccctgcagcggctagacataggactgcgagtttgtgtccctttaaaacgccaccgtgagtgaggttat |
25702680 |
T |
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| Q |
209 |
tcttctgttgacgctcccaaaagttaaccaatccatcagaagaaccgcaataaataatcgttgatgaatcgttaaccgtcaaagccgtcacagcgttttc |
308 |
Q |
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| T |
25702681 |
tcttctgttgatgctcccaaaagttaaccaatccatcagaagaaccgcaataaataatcgttgatgaatcgttaaccgtcaaagccgtcacagcgttttc |
25702780 |
T |
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| Q |
309 |
ttgtttcaacaaaatcctctccaaaacatgcttcgttttctt |
350 |
Q |
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| T |
25702781 |
ttgtttcaacaaaatcctctccaaaacatgcttcgttttctt |
25702822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 262
Target Start/End: Original strand, 6485581 - 6485620
Alignment:
| Q |
223 |
tcccaaaagttaaccaatccatcagaagaaccgcaataaa |
262 |
Q |
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| T |
6485581 |
tcccaaaagttaaccaatccatcagaagcaccacaataaa |
6485620 |
T |
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