View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1299_2D_low_72 (Length: 356)

Name: NF1299_2D_low_72
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1299_2D_low_72
NF1299_2D_low_72
[»] chr2 (2 HSPs)
chr2 (17-271)||(202955-203209)
chr2 (203-269)||(203397-203463)
[»] scaffold0755 (1 HSPs)
scaffold0755 (111-163)||(4629-4681)
[»] chr8 (2 HSPs)
chr8 (113-193)||(32327267-32327347)
chr8 (107-192)||(25864317-25864402)
[»] chr7 (1 HSPs)
chr7 (107-182)||(48577684-48577759)
[»] chr1 (3 HSPs)
chr1 (106-192)||(10463169-10463255)
chr1 (106-192)||(43732823-43732909)
chr1 (107-146)||(50672032-50672071)
[»] chr3 (1 HSPs)
chr3 (107-191)||(5913238-5913322)


Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 271
Target Start/End: Complemental strand, 203209 - 202955
Alignment:
Q  17 accaataacattacaatccgcgggcggaaaaaagaacaaggagcaaattacactgatgccggtggaacacagaaaacacactaaagcaaacctgtgacaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  203209 accaataacattacaatccgcgggcggaaaaaagaacaaggagcaaattacaccggtgccggtggaacacagaaaacacactaaagcaaacctgtgacaa 203110  T
Q  117 attgatgttcgacagtgcggcggagggcggtggttgcaggtcatggcggcgatcggcgaagaaaacgagtggtggtgtctatggggacgagtggtggtgc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  203109 attgatgttcgacagtgcggcggagggcggtggttgcaggtcatggcggcgatcggcgaagaaaacaagtggtggtgcctatggggacgagtggtggtgc 203010  T
Q  217 ctatgcggttgaagaaaaccagagaaggggggagactgtgtttgtgtgcatcagg 271  Q
     |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  203009 ttatggggttgaagaaaaccagagaaggggggagactgtgtttgtgtgcatcagg 202955  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 269
Target Start/End: Original strand, 203397 - 203463
Alignment:
Q  203 acgagtggtggtgcctatgcggttgaagaaaaccagagaaggggggagactgtgtttgtgtgcatca 269  Q
    ||||||||||||||| ||| ||||||||||||   | |||||||  |||||||||||| ||||||||    
T  203397 acgagtggtggtgccgatggggttgaagaaaattggcgaaggggaaagactgtgtttgagtgcatca 203463  T

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Target: scaffold0755 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0755
Description:

Target: scaffold0755; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 4681 - 4629
Alignment:
Q  111 tgacaaattgatgttcgacagtgcggcggagggcggtggttgcaggtcatggc 163  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4681 tgacaaattgatgttcgacggtgcggcggagggcggtggttgcaggtcatggc 4629  T

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Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 113 - 193
Target Start/End: Complemental strand, 32327347 - 32327267
Alignment:
Q  113 acaaattgatgttcgacagtgcggcggagggcggtggttgcaggtcatggcggcgatcggcgaagaaaacgagtggtggtg 193  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||   | ||||||||||| ||||| ||||    
T  32327347 acaaattgatgttcgacggtgcggcggagggcggtggttgcaggtcatggcagcagccagcgaagaaaaccagtggcggtg 32327267  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 192
Target Start/End: Original strand, 25864317 - 25864402
Alignment:
Q  107 cctgtgacaaattgatgttcgacagtgcggcggagggcggtggttgcaggtcatggcggcgatcggcgaagaaaacgagtggtggt 192  Q
    ||||||| |||||||||| | |||||||||||||||||||||||||  ||| | ||||||   ||||||||||||| | |||||||    
T  25864317 cctgtgataaattgatgtacaacagtgcggcggagggcggtggttgatggttacggcggcagacggcgaagaaaaccaatggtggt 25864402  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 107 - 182
Target Start/End: Original strand, 48577684 - 48577759
Alignment:
Q  107 cctgtgacaaattgatgttcgacagtgcggcggagggcggtggttgcaggtcatggcggcgatcggcgaagaaaac 182  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||| || | |||||||||  || ||||||||||    
T  48577684 cctgtgataaattgatgttcaacagtgcggcggagggcggtggttgaagcttatggcggcggacgacgaagaaaac 48577759  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 106 - 192
Target Start/End: Complemental strand, 10463255 - 10463169
Alignment:
Q  106 acctgtgacaaattgatgttcgacagtgcggcggagggcggtggttgcaggtcatggcggcgatcggcgaagaaaacgagtggtggt 192  Q
    |||||||| |||||||||| | |||||||||||||||||||||||||  ||| | || ||||  |||||||||||||  ||||||||    
T  10463255 acctgtgataaattgatgtacaacagtgcggcggagggcggtggttgatggttacggtggcggacggcgaagaaaaccggtggtggt 10463169  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 106 - 192
Target Start/End: Complemental strand, 43732909 - 43732823
Alignment:
Q  106 acctgtgacaaattgatgttcgacagtgcggcggagggcggtggttgcaggtcatggcggcgatcggcgaagaaaacgagtggtggt 192  Q
    |||||||| |||||||||| | |||||||||||||||||||||||||  ||| | || ||||  |||||||||||||  ||||||||    
T  43732909 acctgtgataaattgatgtacaacagtgcggcggagggcggtggttgatggttacggtggcggacggcgaagaaaaccggtggtggt 43732823  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 107 - 146
Target Start/End: Complemental strand, 50672071 - 50672032
Alignment:
Q  107 cctgtgacaaattgatgttcgacagtgcggcggagggcgg 146  Q
    ||||||| |||||||||||| |||||||||||||||||||    
T  50672071 cctgtgataaattgatgttcaacagtgcggcggagggcgg 50672032  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 107 - 191
Target Start/End: Original strand, 5913238 - 5913322
Alignment:
Q  107 cctgtgacaaattgatgttcgacagtgcggcggagggcggtggttgcaggtcatggcggcgatcggcgaagaaaacgagtggtgg 191  Q
    ||||||| |||||||||||| |||||| || |||||| ||||||||  ||| |||||||||  |||||||||||||  |||||||    
T  5913238 cctgtgataaattgatgttcaacagtgtggtggagggtggtggttgatggttatggcggcggacggcgaagaaaaccggtggtgg 5913322  T

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