View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1299_2D_low_74 (Length: 354)

Name: NF1299_2D_low_74
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1299_2D_low_74
NF1299_2D_low_74
[»] chr1 (6 HSPs)
chr1 (66-335)||(5958429-5958698)
chr1 (1-63)||(5958327-5958389)
chr1 (1-54)||(12688214-12688267)
chr1 (10-54)||(45718378-45718422)
chr1 (1-63)||(28442146-28442208)
chr1 (1-54)||(5411775-5411828)
[»] chr8 (7 HSPs)
chr8 (1-54)||(37929143-37929196)
chr8 (65-112)||(37929057-37929104)
chr8 (65-112)||(31686530-31686577)
chr8 (1-54)||(7179040-7179093)
chr8 (1-54)||(31686438-31686491)
chr8 (1-54)||(33191213-33191266)
chr8 (17-50)||(38685812-38685845)
[»] chr4 (6 HSPs)
chr4 (1-56)||(40153933-40153988)
chr4 (1-54)||(10552674-10552727)
chr4 (1-54)||(11131197-11131250)
chr4 (1-54)||(13137116-13137169)
chr4 (1-54)||(25130451-25130504)
chr4 (1-54)||(54870828-54870881)
[»] chr7 (3 HSPs)
chr7 (1-54)||(38153941-38153994)
chr7 (1-54)||(27854918-27854971)
chr7 (1-54)||(40616744-40616797)
[»] chr6 (6 HSPs)
chr6 (1-54)||(32533074-32533127)
chr6 (1-63)||(11298593-11298655)
chr6 (1-63)||(29321325-29321387)
chr6 (1-50)||(15117265-15117314)
chr6 (21-54)||(18015755-18015788)
chr6 (19-52)||(18672088-18672121)
[»] chr2 (4 HSPs)
chr2 (1-54)||(841558-841611)
chr2 (2-56)||(40426934-40426988)
chr2 (1-54)||(24739853-24739906)
chr2 (12-56)||(9840813-9840857)
[»] chr3 (5 HSPs)
chr3 (1-63)||(29542388-29542450)
chr3 (1-63)||(41878728-41878790)
chr3 (1-54)||(19979288-19979341)
chr3 (1-63)||(22534039-22534101)
chr3 (1-54)||(42806299-42806352)
[»] chr5 (1 HSPs)
chr5 (22-54)||(39839961-39839993)


Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 66 - 335
Target Start/End: Original strand, 5958429 - 5958698
Alignment:
Q  66 ttattaagcaaattttgtcgttaaaatacctgctatttctttctttcttatttctttcgatatttggaaaatggtgatttaattaaccacgtaatacata 165  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5958429 ttattaagcaaattttgtcgttaaaatgtctgctatttctttctttcttatttctttcgatatttggaaaatggtgatttaattaaccacgtaatacata 5958528  T
Q  166 ttagcctacccacaaagaatatcttgattggagaacatttgaaaatatatcctaataagctcgatatctatagagcatatatatccttttcaaaaaccta 265  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5958529 ttagcctacccacagagaatatcttgattggagaacatttgaaaatatatcctaataagctcgatatctatagagcatatatatccttttcaaaaaccta 5958628  T
Q  266 tattaaaacgtgtaaatgacgttgttcgttttcatatacgctactagtgctaatggataccctaattatg 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5958629 tattaaaacgtgtaaatgacgttgttcgttttcatatacgctactagtgctaatggataccctaattatg 5958698  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 5958389 - 5958327
Alignment:
Q  1 ggttgaatgtgaaatttgctactcttccctttaactatcatggatggtggcttaattcattta 63  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5958389 ggttgaaggtgaaatttgctacttttccctttaactatcatggatggtggcttaattcattta 5958327  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 12688214 - 12688267
Alignment:
Q  1 ggttgaatgtgaaatttgctactcttccctttaactatcatggatggtggctta 54  Q
    ||||||| ||||| ||| | ||||||||||||||||||||||||||||||||||    
T  12688214 ggttgaaggtgaagtttccaactcttccctttaactatcatggatggtggctta 12688267  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 45718378 - 45718422
Alignment:
Q  10 tgaaatttgctactcttccctttaactatcatggatggtggctta 54  Q
    |||||||||| |||||||||||||| |||||||| ||||||||||    
T  45718378 tgaaatttgccactcttccctttaattatcatggttggtggctta 45718422  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 28442208 - 28442146
Alignment:
Q  1 ggttgaatgtgaaatttgctactcttccctttaactatcatggatggtggcttaattcattta 63  Q
    ||||||| ||||| ||||   |||||||||||||||||||||| |||||||||| | ||||||    
T  28442208 ggttgaaggtgaagtttgtctctcttccctttaactatcatggttggtggcttagtccattta 28442146  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 5411775 - 5411828
Alignment:
Q  1 ggttgaatgtgaaatttgctactcttccctttaactatcatggatggtggctta 54  Q
    ||||||| ||||| ||||  ||||||||||||||||||||||| || |||||||    
T  5411775 ggttgaaggtgaagtttgtaactcttccctttaactatcatggttgttggctta 5411828  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 37929143 - 37929196
Alignment:
Q  1 ggttgaatgtgaaatttgctactcttccctttaactatcatggatggtggctta 54  Q
    ||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||    
T  37929143 ggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggctta 37929196  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 112
Target Start/End: Complemental strand, 37929104 - 37929057
Alignment:
Q  65 cttattaagcaaattttgtcgttaaaatacctgctatttctttctttc 112  Q
    |||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  37929104 cttattaagcaaatttagtcgttaaaatgcctgttatttctttctttc 37929057  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 112
Target Start/End: Original strand, 31686530 - 31686577
Alignment:
Q  65 cttattaagcaaattttgtcgttaaaatacctgctatttctttctttc 112  Q
    ||||||||||| ||||||||||||||||  ||| ||||||||||||||    
T  31686530 cttattaagcatattttgtcgttaaaatgtctgttatttctttctttc 31686577  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 7179093 - 7179040
Alignment:
Q  1 ggttgaatgtgaaatttgctactcttccctttaactatcatggatggtggctta 54  Q
    ||||||| ||||| ||||  ||||||||||||||||||||||  ||||||||||    
T  7179093 ggttgaaggtgaagtttgtaactcttccctttaactatcatgattggtggctta 7179040  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 31686491 - 31686438
Alignment:
Q  1 ggttgaatgtgaaatttgctactcttccctttaactatcatggatggtggctta 54  Q
    ||||||| | ||||||| ||||||||||||||||||| ||||| ||| ||||||    
T  31686491 ggttgaaggagaaatttcctactcttccctttaactaccatgggtggcggctta 31686438  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 33191266 - 33191213
Alignment:
Q  1 ggttgaatgtgaaatttgctactcttccctttaactatcatggatggtggctta 54  Q
    |||||||  ||||||||| |||||||||||| || |||||||| ||||||||||    
T  33191266 ggttgaagttgaaatttgatactcttcccttcaattatcatggttggtggctta 33191213  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 38685812 - 38685845
Alignment:
Q  17 tgctactcttccctttaactatcatggatggtgg 50  Q
    ||||||||||||||||||||||||||| ||||||    
T  38685812 tgctactcttccctttaactatcatggttggtgg 38685845  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 40153988 - 40153933
Alignment:
Q  1 ggttgaatgtgaaatttgctactcttccctttaactatcatggatggtggcttaat 56  Q
    ||||||| ||||||||||||| ||||||||||||||||||| | ||||||||||||    
T  40153988 ggttgaaggtgaaatttgctaatcttccctttaactatcatagttggtggcttaat 40153933  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 10552674 - 10552727
Alignment:
Q  1 ggttgaatgtgaaatttgctactcttccctttaactatcatggatggtggctta 54  Q
    ||||||| ||||| | ||||||||||||||||||||||||||| ||||||||||    
T  10552674 ggttgaaggtgaagtatgctactcttccctttaactatcatggttggtggctta 10552727  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 11131250 - 11131197
Alignment:
Q  1 ggttgaatgtgaaatttgctactcttccctttaactatcatggatggtggctta 54  Q
    ||||||| ||||| ||||  |||||||||||||| |||||||| ||||||||||    
T  11131250 ggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggctta 11131197  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 13137116 - 13137169
Alignment:
Q  1 ggttgaatgtgaaatttgctactcttccctttaactatcatggatggtggctta 54  Q
    ||||||| ||||||||||||||||||  ||| || |||||||| ||||||||||    
T  13137116 ggttgaaggtgaaatttgctactcttttcttcaattatcatggttggtggctta 13137169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 25130504 - 25130451
Alignment:
Q  1 ggttgaatgtgaaatttgctactcttccctttaactatcatggatggtggctta 54  Q
    ||||||| | |||||||||||||||| || | ||||||||||| ||||||||||    
T  25130504 ggttgaaggagaaatttgctactctttccctcaactatcatggttggtggctta 25130451  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 54870881 - 54870828
Alignment:
Q  1 ggttgaatgtgaaatttgctactcttccctttaactatcatggatggtggctta 54  Q
    |||| |||||||| ||||  |||||||||||||| |||||||| ||||||||||    
T  54870881 ggttaaatgtgaagtttgtaactcttccctttaattatcatggttggtggctta 54870828  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 38153941 - 38153994
Alignment:
Q  1 ggttgaatgtgaaatttgctactcttccctttaactatcatggatggtggctta 54  Q
    ||||||| ||||||||| ||||||||||||||||||| ||| ||||||||||||    
T  38153941 ggttgaaggtgaaatttcctactcttccctttaactaccatagatggtggctta 38153994  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 27854918 - 27854971
Alignment:
Q  1 ggttgaatgtgaaatttgctactcttccctttaactatcatggatggtggctta 54  Q
    ||||||| ||||| | |||||| |||||||||||||||||||| ||||||||||    
T  27854918 ggttgaaggtgaagtatgctacccttccctttaactatcatggttggtggctta 27854971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 40616797 - 40616744
Alignment:
Q  1 ggttgaatgtgaaatttgctactcttccctttaactatcatggatggtggctta 54  Q
    ||||||| ||||| | ||||||||||||||||||||||| ||| ||||||||||    
T  40616797 ggttgaaggtgaagtatgctactcttccctttaactatcttggttggtggctta 40616744  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 32533127 - 32533074
Alignment:
Q  1 ggttgaatgtgaaatttgctactcttccctttaactatcatggatggtggctta 54  Q
    |||||||  |||| ||||||||||||||||||||||||||||| ||||||||||    
T  32533127 ggttgaagatgaagtttgctactcttccctttaactatcatggttggtggctta 32533074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 11298655 - 11298593
Alignment:
Q  1 ggttgaatgtgaaatttgctactcttccctttaactatcatggatggtggcttaattcattta 63  Q
    ||||||| ||||| ||||  ||||||||||||||||||||||| |||||||||| | ||||||    
T  11298655 ggttgaaggtgaagtttgtcactcttccctttaactatcatggttggtggcttagtccattta 11298593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 29321387 - 29321325
Alignment:
Q  1 ggttgaatgtgaaatttgctactcttccctttaactatcatggatggtggcttaattcattta 63  Q
    ||||||| ||||| ||||  |||||||||||||||||| |||| |||||||||| | ||||||    
T  29321387 ggttgaaagtgaagtttgtcactcttccctttaactatgatggttggtggcttagtccattta 29321325  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 15117314 - 15117265
Alignment:
Q  1 ggttgaatgtgaaatttgctactcttccctttaactatcatggatggtgg 50  Q
    ||||||| ||||| | |||||||||||||||||| |||||||| ||||||    
T  15117314 ggttgaaggtgaagtatgctactcttccctttaattatcatggttggtgg 15117265  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 18015788 - 18015755
Alignment:
Q  21 actcttccctttaactatcatggatggtggctta 54  Q
    ||||||||||||||||||||||| ||||||||||    
T  18015788 actcttccctttaactatcatggttggtggctta 18015755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 18672088 - 18672121
Alignment:
Q  19 ctactcttccctttaactatcatggatggtggct 52  Q
    ||||||||||||||||||||||||| ||||||||    
T  18672088 ctactcttccctttaactatcatggttggtggct 18672121  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 841611 - 841558
Alignment:
Q  1 ggttgaatgtgaaatttgctactcttccctttaactatcatggatggtggctta 54  Q
    ||||||| ||||| | ||||||||||||||||||||||||||| ||||||||||    
T  841611 ggttgaaggtgaagtatgctactcttccctttaactatcatggttggtggctta 841558  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 40426988 - 40426934
Alignment:
Q  2 gttgaatgtgaaatttgctactcttccctttaactatcatggatggtggcttaat 56  Q
    |||||| ||||| | || |||||||||||||||||||||||| ||||||||||||    
T  40426988 gttgaaagtgaagtatgttactcttccctttaactatcatggttggtggcttaat 40426934  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 24739853 - 24739906
Alignment:
Q  1 ggttgaatgtgaaatttgctactcttccctttaactatcatggatggtggctta 54  Q
    ||||||| ||||| | |||||| |||||||||||||||||||| ||||||||||    
T  24739853 ggttgaaggtgaagtatgctacccttccctttaactatcatggttggtggctta 24739906  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 9840813 - 9840857
Alignment:
Q  12 aaatttgctactcttccctttaactatcatggatggtggcttaat 56  Q
    ||||||||||||||||| || || |||||||| ||||||||||||    
T  9840813 aaatttgctactcttccattcaattatcatggttggtggcttaat 9840857  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 29542450 - 29542388
Alignment:
Q  1 ggttgaatgtgaaatttgctactcttccctttaactatcatggatggtggcttaattcattta 63  Q
    ||||||| ||||| ||||  ||||||||||||||||||||||| |||||||||| | ||||||    
T  29542450 ggttgaaggtgaagtttgtcactcttccctttaactatcatggttggtggcttagtccattta 29542388  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 41878728 - 41878790
Alignment:
Q  1 ggttgaatgtgaaatttgctactcttccctttaactatcatggatggtggcttaattcattta 63  Q
    ||||||| ||||| ||||  ||||||||||||||||||||||| |||||||||| | ||||||    
T  41878728 ggttgaaggtgaagtttgtcactcttccctttaactatcatggttggtggcttagtccattta 41878790  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 19979341 - 19979288
Alignment:
Q  1 ggttgaatgtgaaatttgctactcttccctttaactatcatggatggtggctta 54  Q
    ||||||| ||||| ||||  ||||||||||||||||||||||| ||||||||||    
T  19979341 ggttgaaggtgaagtttgtaactcttccctttaactatcatggttggtggctta 19979288  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 22534039 - 22534101
Alignment:
Q  1 ggttgaatgtgaaatttgctactcttccctttaactatcatggatggtggcttaattcattta 63  Q
    ||||||| ||||| ||||  |||||||| |||||||||||||| |||||||||| | ||||||    
T  22534039 ggttgaaggtgaagtttgtcactcttccttttaactatcatgggtggtggcttagtccattta 22534101  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 42806352 - 42806299
Alignment:
Q  1 ggttgaatgtgaaatttgctactcttccctttaactatcatggatggtggctta 54  Q
    ||||||| ||||| ||||  |||||||| |||||||||||||| ||||||||||    
T  42806352 ggttgaaggtgaagtttgtcactcttccttttaactatcatgggtggtggctta 42806299  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 39839961 - 39839993
Alignment:
Q  22 ctcttccctttaactatcatggatggtggctta 54  Q
    |||||||||||||||||||||| ||||||||||    
T  39839961 ctcttccctttaactatcatggttggtggctta 39839993  T

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