View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299_2D_low_77 (Length: 352)
Name: NF1299_2D_low_77
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_2D_low_77 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 37054348 - 37054016
Alignment:
| Q |
1 |
cagaaaattttgagggaagggaaattggaactggtttgagtggttattagggaactggttttgatttggtgactgagttaggtccaatgtaacagttgga |
100 |
Q |
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| T |
37054348 |
cagaaaattttgagggaagggaaattggaactggtttgagtggttattagggaactggttttgatttggtgactgagttaggtccaatgtaacagttgga |
37054249 |
T |
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| Q |
101 |
aatggagctgatgctgagatagttgctatgcttgaagaataaggaaggattgctcttgtgaggtaatttgggttcattagtccatctgcacttgtcattg |
200 |
Q |
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| T |
37054248 |
aatggagctgatgctgagatagttgctatgcttgaagaataaggaaggattgctcttgtgaggtaatttgggttcattagtccatctgcacttgtcattg |
37054149 |
T |
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| Q |
201 |
gtcctgacagcaacattcttgcagctgatgaagttgtttgtaccatttccatagctgctggaggcaaagcatgaatgtggtgtccttcatatgttgtgat |
300 |
Q |
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| T |
37054148 |
gtcctgacagcaacattcttgcagctgatgatgttgtttgtaccatttccatagctgctggaggcaaagcatgaatgtggtgtccttcatatgttgtgat |
37054049 |
T |
|
| Q |
301 |
aagtattgttttgtcttcagcacacctttgtac |
333 |
Q |
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| T |
37054048 |
aagtattgttttgtcttcagcacacctttgtac |
37054016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 86 - 261
Target Start/End: Original strand, 8496786 - 8496961
Alignment:
| Q |
86 |
aatgtaacagttggaaatggagctgatgctgagatagttgctatgcttgaagaataaggaaggattgctcttgtgaggtaatttgggttcattagtccat |
185 |
Q |
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| T |
8496786 |
aatgtaacagtaggaaatggtgctgaagctgaaagtgtagccatgcttgttgaacaaggtagaatagctcttgctaataaatttggtgtcattattccat |
8496885 |
T |
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| Q |
186 |
ctgcacttgtcattggtcctgacagcaacattcttgcagctgatgaagttgtttgtaccatttccatagctgctgg |
261 |
Q |
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| T |
8496886 |
ctgcacttgacattgatcctgatagtaacatgcttgctgctgctgaagttgttgatgccattgccatagctgctgg |
8496961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 95 - 249
Target Start/End: Original strand, 16856837 - 16856991
Alignment:
| Q |
95 |
gttggaaatggagctgatgctgagatagttgctatgcttgaagaataaggaaggattgctcttgtgaggtaatttgggttcattagtccatctgcacttg |
194 |
Q |
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| T |
16856837 |
gttggaaatggagcagaagctgagatagttgcaatacttgaagaacaaggaagaggtgttcttgtgagtaaatttgcattcaattgtccatcattacttg |
16856936 |
T |
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| Q |
195 |
tcattggtcctgacagcaacattcttgcagctgatgaagttgtttgtaccatttc |
249 |
Q |
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| T |
16856937 |
atgttgatgctgaaagaagcatctttgcagctgctgaagttgtttgtaccatttc |
16856991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 333
Target Start/End: Original strand, 17530228 - 17530473
Alignment:
| Q |
88 |
tgtaacagttggaaatggagctgatgctgagatagttgctatgcttgaagaataaggaaggattgctcttgtgaggtaatttgggttcattagtccatct |
187 |
Q |
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| T |
17530228 |
tgtaatagttgaatatggagcagaagctgagatagttgcaatccttgaagaacaaggaaggagtgttcttgtgagtaaatttgcattcaattgtccatca |
17530327 |
T |
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| Q |
188 |
gcacttgtcattggtcctgacagcaacattcttgcagctgatgaagttgtttgtaccatttccatagctgctggaggcaaagcatgaatgtggtgtcctt |
287 |
Q |
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| T |
17530328 |
ttgcttgatgttgatgctgaaagaagcatctttgcagctgctgaagttgtttttgccatttctttggctgctgcaggtaaagggtggttgtgatttcctt |
17530427 |
T |
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| Q |
288 |
catatgttgtgataagtattgttttgtcttcagcacacctttgtac |
333 |
Q |
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| T |
17530428 |
catatgttgtcatgacaactgttttgtcaagagcacacctttgtac |
17530473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 148
Target Start/End: Original strand, 17515078 - 17515131
Alignment:
| Q |
95 |
gttggaaatggagctgatgctgagatagttgctatgcttgaagaataaggaagg |
148 |
Q |
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| T |
17515078 |
gttggaaatggtgcagaagctgagatagttgcaatacttgaagaacaaggaagg |
17515131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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