View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299_2D_low_78 (Length: 352)
Name: NF1299_2D_low_78
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_2D_low_78 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 8296707 - 8296374
Alignment:
| Q |
1 |
tgttatcctctgctttgctaatttcatgtcctgctttagggtatttgtttgaatctggagatttctcttaatgttaatgtcttccccaaatatttatgtg |
100 |
Q |
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| T |
8296707 |
tgttatcctctgctttgctaatttcatgtcctgctttagggtatttgtttgaatctggagatttctcttaatgttaatgtcttccccaaatatttatgtg |
8296608 |
T |
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| Q |
101 |
gaatcaatggacagtttaagctatttccaattgcctgatgaagtttggtttttgcatttttaaaaaccaaaagagtgaactttgtctttaaatttgcttg |
200 |
Q |
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| T |
8296607 |
gaatcaatggacagtttaagctatttccaatttcctgatgaagtttggtttttgcatatttaaaaaccaaaagagtgaactttgtctttaaatttgcttg |
8296508 |
T |
|
| Q |
201 |
aaactttggttttagtttcatttggttcattataacaatcaaattcttctctaacttaccaaatgagaaaaatatatgaattgttgatcctcatgtttca |
300 |
Q |
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| T |
8296507 |
aaactttggttttggtttcatttagttcattataacaatcaaattcttctctaacttaccaaatgagaaaaatatatgaattgttgatcctcatgtttca |
8296408 |
T |
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| Q |
301 |
taatttcaattggaagcaaccattttagaactga |
334 |
Q |
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| T |
8296407 |
taatttcaattggaagcaaccattttagaactga |
8296374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 4 - 242
Target Start/End: Complemental strand, 8300281 - 8300054
Alignment:
| Q |
4 |
tatcctctgctttgctaatttcatgtcctgctttagggtatttgtttgaatctggagatttctcttaatgttaatgtcttccccaaatatttatgtggaa |
103 |
Q |
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| T |
8300281 |
tatccactgccttgctaatttcatttcctgcttttgggtatttgtttgaatctggagatttctcttaatgttaatgtcttccccaaatatttatgtggaa |
8300182 |
T |
|
| Q |
104 |
tcaatggacagtttaagctatttccaattgcctgat-gaagtttggtttttgcatttttaaaaaccaaaagagtgaactttgtctttaaatttgcttgaa |
202 |
Q |
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| T |
8300181 |
tcaatggacagtttaagctatttccaattgcctgatggaagtttggtttttgcatatttaaaaaccaaaagagtgaactttgtctttaaa---------- |
8300092 |
T |
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| Q |
203 |
actttggttttagtttcatttggttcattataacaatcaa |
242 |
Q |
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| T |
8300091 |
--tttggttttagtttcatttagttcattataacaatcaa |
8300054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 117 - 334
Target Start/End: Original strand, 18280154 - 18280371
Alignment:
| Q |
117 |
taagctatttccaattgcctgatgaagtttggtttttgcatttttaaaaaccaaaagagtgaactttgtctttaaatttgcttgaaactttggttttagt |
216 |
Q |
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| T |
18280154 |
taagctatttccaattgcctgatgaagtttggtttttgcatatttaaaaaccaaaagagtgaacattgtctttaaatttgcttgaaactttggttttggc |
18280253 |
T |
|
| Q |
217 |
ttcatttggttcattataacaatcaaattcttctctaacttaccaaatgagaaaaatatatgaattgttgatcctcatgtttcataatttcaattggaag |
316 |
Q |
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| T |
18280254 |
ttcatttagttcattataccaatcaaattcttctctaacggaccaactgagaaaaatcaatgaattgatgatcctcataattcataatttcaattggaag |
18280353 |
T |
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| Q |
317 |
caaccattttagaactga |
334 |
Q |
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| T |
18280354 |
caaccattttagaactga |
18280371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 18279962 - 18280081
Alignment:
| Q |
1 |
tgttatcctctgctttgctaatttcatgtcctgctttagggtatttgtttgaatctggagatttctcttaatgttaatgtcttccccaaatatttatgtg |
100 |
Q |
| |
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||||| ||||| | ||||||||||||| ||||||||| |||||||||||||||||| || |||| |||||||||||| ||| |||||||| |||||||| |
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| T |
18279962 |
tgttaacctcttccttgctaatttcatttcctgcttttgggtatttgtttgaatctagaaatttatcttaatgttaacatctgccccaaatttttatgtg |
18280061 |
T |
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| Q |
101 |
gaatcaatggacagtttaag |
120 |
Q |
| |
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|||| |||| ||| |||||| |
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| T |
18280062 |
gaatgaatgcacaatttaag |
18280081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 9e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 117 - 334
Target Start/End: Complemental strand, 1144931 - 1144714
Alignment:
| Q |
117 |
taagctatttccaattgcctgatgaagtttggtttttgcatttttaaaaaccaaaagagtgaactttgtctttaaatttgcttgaaactttggttttagt |
216 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||| ||||||||||||||| |||||||||||| | |
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| T |
1144931 |
taagctatttccaattgcctgatgaagtttgttttttgcatatttaaaaaccaaaagtttgaactttgcctttaaatttgcttggaactttggttttggc |
1144832 |
T |
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| Q |
217 |
ttcatttggttcattataacaatcaaattcttctctaacttaccaaatga-gaaaaatatatgaattgttgatcctcatgtttcataatttcaattggaa |
315 |
Q |
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|||| || ||||||| ||||||||||||||||||| ||| ||||||||| ||||||| |||||||| |||| |||||||||||| |||| |||| ||| |
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| T |
1144831 |
ttca-ttagttcatttgaacaatcaaattcttctctcactaaccaaatgaggaaaaatcaatgaattgatgattctcatgtttcatcattttaattagaa |
1144733 |
T |
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| Q |
316 |
gcaaccattttagaactga |
334 |
Q |
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| T |
1144732 |
ggaaccattttagaactga |
1144714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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