View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1299_2D_low_80 (Length: 349)

Name: NF1299_2D_low_80
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1299_2D_low_80
NF1299_2D_low_80
[»] chr5 (1 HSPs)
chr5 (202-330)||(39845263-39845391)
[»] chr8 (2 HSPs)
chr8 (29-126)||(6379624-6379720)
chr8 (29-126)||(6384315-6384411)
[»] chr2 (2 HSPs)
chr2 (29-126)||(1617341-1617437)
chr2 (29-126)||(1622033-1622129)
[»] chr3 (1 HSPs)
chr3 (29-125)||(42574256-42574351)


Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 202 - 330
Target Start/End: Original strand, 39845263 - 39845391
Alignment:
Q  202 aactgtctgtatttgtttccaagcccctttgatatttggaatactttttccacatctgagagtggttttccaaatctgcaagttggtcacacgtatcttt 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39845263 aactgtctgtatttgtttccaagcccctttgatatttggaatactttttccacatctgagagtggttttccaaatctgcaagttggtcacacgtatcttt 39845362  T
Q  302 gaattttctaatttactacaaagtacaat 330  Q
    ||||||||||||||||||| |||||||||    
T  39845363 gaattttctaatttactactaagtacaat 39845391  T

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Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 6379624 - 6379720
Alignment:
Q  29 taggcttgactttagggattttgataggaaaactctgtatatatgtaacactgatttacaatgaaatacaggacagtgaaaacactttcgttcctgtc 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||| ||||||||| |||||||||    
T  6379624 taggcttgactttagggattttgataggaaaactctgtatatatgtaacactgatttacaatgaaagatatgacagtg-aaacactttggttcctgtc 6379720  T

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Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 6384315 - 6384411
Alignment:
Q  29 taggcttgactttagggattttgataggaaaactctgtatatatgtaacactgatttacaatgaaatacaggacagtgaaaacactttcgttcctgtc 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||| ||||||||| |||||||||    
T  6384315 taggcttgactttagggattttgataggaaaactctgtatatatgtaacactgatttacaatgaaagatatgacagtg-aaacactttggttcctgtc 6384411  T

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Target: chr2 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 29 - 126
Target Start/End: Complemental strand, 1617437 - 1617341
Alignment:
Q  29 taggcttgactttagggattttgataggaaaactctgtatatatgtaacactgatttacaatgaaatacaggacagtgaaaacactttcgttcctgtc 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||| ||||||||| |||||||||    
T  1617437 taggcttgactttagggattttgataggaaaactctgtatatatgtaacactgatttacaatgaaagatatgacagtg-aaacactttggttcctgtc 1617341  T

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Target: chr2; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 29 - 126
Target Start/End: Complemental strand, 1622129 - 1622033
Alignment:
Q  29 taggcttgactttagggattttgataggaaaactctgtatatatgtaacactgatttacaatgaaatacaggacagtgaaaacactttcgttcctgtc 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||| ||||||||| |||||||||    
T  1622129 taggcttgactttagggattttgataggaaaactctgtatatatgtaacactgatttacaatgaaagatatgacagtg-aaacactttggttcctgtc 1622033  T

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Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 29 - 125
Target Start/End: Original strand, 42574256 - 42574351
Alignment:
Q  29 taggcttgactttagggattttgataggaaaactctgtatatatgtaacactgatttacaatgaaatacaggacagtgaaaacactttcgttcctgt 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||| ||||||||| ||||||||    
T  42574256 taggcttgactttagggattttgataggaaaactctgtatatatgtaacactgatttacaatgaaagatatgacagtg-aaacactttggttcctgt 42574351  T

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