View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299_2D_low_95 (Length: 304)
Name: NF1299_2D_low_95
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_2D_low_95 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 4 - 286
Target Start/End: Original strand, 3109016 - 3109316
Alignment:
| Q |
4 |
ttttttatatacaataaata----ataaacaatgaaacattagggtaaggtaagt----ctgattttttagcatttctcagctgccactgagttttggtt |
95 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3109016 |
ttttttatatacaataaatatataataaacaatgaaatattagggtaaggtaagtaagtctgattttttagcatttctcagctgccactgagttttggtt |
3109115 |
T |
|
| Q |
96 |
ctttgtttctctttctctccctttcaattttaata------tcaatttttcaacataaagtaactattaacattgaatattgttatcaaagtacaagagt |
189 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3109116 |
ctttgtttctctttctctccctttcaattttaatatcaatatcaatttttcaacataaagtaactattaacattgaatattgttatcaaagtacaagagt |
3109215 |
T |
|
| Q |
190 |
gaaagagaaagaaattgttgt----gtgcgtgcgtgtgtgtattcattacacacaattatgtctttctctagcacaataatccgaccacgtatgttgttg |
285 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3109216 |
gaaagagaaagaaattgttgtgtgcgtgcgtgcgtgtgtgtattcattacacacaattatgtctttctctagcacaataatccgaccacgtatgttgttg |
3109315 |
T |
|
| Q |
286 |
g |
286 |
Q |
| |
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| |
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|
| T |
3109316 |
g |
3109316 |
T |
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