View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1300-Insertion-1 (Length: 217)
Name: NF1300-Insertion-1
Description: NF1300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1300-Insertion-1 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 8 - 217
Target Start/End: Complemental strand, 7446676 - 7446467
Alignment:
| Q |
8 |
gtcctaaagaaccggttgcatgctagtgtttcttctctctatcaacaacatttagtggattaaactaagcaaacaacttttttagagctaaacgagaata |
107 |
Q |
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| T |
7446676 |
gtcctaaagaaccggttgcatgctagtgtttcttctctctatcaacaacatttagtggattaaactaagcaaacaacttttttagagctaaacgagaata |
7446577 |
T |
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| Q |
108 |
gaaaaaatatcaagaccaccagagaagaaacatggtaacatgcttgccctaaattgacgttactgctgttgtgttgagacaaataaaaacaaaacactat |
207 |
Q |
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| T |
7446576 |
gaaaaaatatcaagaccaccagagaagaaacatggtaacatgcttgccctaaattgacgttactggtgttgtgttgagacaaataaaaacaaaacactat |
7446477 |
T |
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| Q |
208 |
agtaatataa |
217 |
Q |
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| T |
7446476 |
agtaatataa |
7446467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 103 - 217
Target Start/End: Complemental strand, 7461569 - 7461455
Alignment:
| Q |
103 |
gaatagaaaaaatatcaagaccaccagagaagaaacatggtaacatgcttgccctaaattgacgttactgctgttgtgttgagacaaataaaaacaaaac |
202 |
Q |
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| T |
7461569 |
gaataaaaaaaaaatcaagaccaccagagaagaaacatggtagcatgcttgccctaaattgacgttactagtgttgtgttgatacaaataaaaacaaaac |
7461470 |
T |
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| Q |
203 |
actatagtaatataa |
217 |
Q |
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| T |
7461469 |
actatagtaatataa |
7461455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 7461674 - 7461594
Alignment:
| Q |
8 |
gtcctaaagaaccggttgcatgctagtgtttcttctctctatcaacaacatttagtggattaaactaagcaaacaactttttta |
91 |
Q |
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|||||||||||| |||||||||||||| | |||||||| |||||| ||||| | |||||||||||||||||||||||||| |
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| T |
7461674 |
gtcctaaagaactcgttgcatgctagtgcctattctctctttcaaca---tttagggtattaaactaagcaaacaactttttta |
7461594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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