View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1300-Insertion-4 (Length: 403)
Name: NF1300-Insertion-4
Description: NF1300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1300-Insertion-4 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 8 - 396
Target Start/End: Complemental strand, 258676 - 258307
Alignment:
| Q |
8 |
gtagacagaatctatgggttcatacatcaaaactatgccctttgagaatatcatgcatgttatttcctttgacaaaattcaagagtaaatcataggatct |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
258676 |
gtagacagaatctatgggttcatacatcaaaactatgccccttgagaatatcatgcatgttatttcctttgacaaaattcaagagtaaatcataggatct |
258577 |
T |
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| Q |
108 |
acacattccgagtttgagagcgttagggccttccagtaacacgaaatgtagtttaatatactttgtcaaatggaatagcagggaatcagagcaagcatat |
207 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
258576 |
acacatgccgagtttgagagcgttagggccttccagtaacacgaaatgtagttt----------gtcaaatggaatagcagggaatcagagcaagcatat |
258487 |
T |
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| Q |
208 |
tgttaatcatcaacaagcatcatagtaaaactaaaacttcaaagaaactaagtttgtcacttgcatatatataggtttcttcctaaacaataagggaggc |
307 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
258486 |
tgttaatcatcaacaagcatcatagtaaa-ctaaaacttcaaagaaactaagtttgtcacttgcatata----ggtttcttcctaaacaataagggaggc |
258392 |
T |
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| Q |
308 |
tctgtggtgaagaacatgaaatacatacagatgtattcatcatatccttactatatatacacatgcatggtaaaacatgtcacaacaaa |
396 |
Q |
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| T |
258391 |
tctgtggtgaagaacatgaaatacatacagatgtattcatcatatccttac----tatacacatgcattgtaaaacatgtcacaacaaa |
258307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 8 - 396
Target Start/End: Original strand, 657245 - 657614
Alignment:
| Q |
8 |
gtagacagaatctatgggttcatacatcaaaactatgccctttgagaatatcatgcatgttatttcctttgacaaaattcaagagtaaatcataggatct |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
657245 |
gtagacagaatctatgggttcatacatcaaaactatgccccttgagaatatcatgcatgttatttcctttgacaaaattcaagagtaaatcataggatct |
657344 |
T |
|
| Q |
108 |
acacattccgagtttgagagcgttagggccttccagtaacacgaaatgtagtttaatatactttgtcaaatggaatagcagggaatcagagcaagcatat |
207 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
657345 |
acacatgccgagtttgagagcgttagggccttccagtaacacgaaatgtagttt----------gtcaaatggaatagcagggaatcagagcaagcatat |
657434 |
T |
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| Q |
208 |
tgttaatcatcaacaagcatcatagtaaaactaaaacttcaaagaaactaagtttgtcacttgcatatatataggtttcttcctaaacaataagggaggc |
307 |
Q |
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| T |
657435 |
tgttaatcatcaacaagcatcatagtaaa-ctaaaacttcaaagaaactaagtttgtcacttgcatat----aggtttcttcctaaacaataagggaggc |
657529 |
T |
|
| Q |
308 |
tctgtggtgaagaacatgaaatacatacagatgtattcatcatatccttactatatatacacatgcatggtaaaacatgtcacaacaaa |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
657530 |
tctgtggtgaagaacatgaaatacatacagatgtattcatcatatccttac----tatacacatgcattgtaaaacatgtcacaacaaa |
657614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 8 - 396
Target Start/End: Original strand, 842980 - 843349
Alignment:
| Q |
8 |
gtagacagaatctatgggttcatacatcaaaactatgccctttgagaatatcatgcatgttatttcctttgacaaaattcaagagtaaatcataggatct |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
842980 |
gtagacagaatctatgggttcatacatcaaaactatgccccttgagaatatcatgcatgttatttcctttgacaaaattcaagagtaaatcataggatct |
843079 |
T |
|
| Q |
108 |
acacattccgagtttgagagcgttagggccttccagtaacacgaaatgtagtttaatatactttgtcaaatggaatagcagggaatcagagcaagcatat |
207 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
843080 |
acacatgccgagtttgagagcgttagggccttccagtaacacgaaatgtagttt----------gtcaaatggaatagcagggaatcagagcaagcatat |
843169 |
T |
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| Q |
208 |
tgttaatcatcaacaagcatcatagtaaaactaaaacttcaaagaaactaagtttgtcacttgcatatatataggtttcttcctaaacaataagggaggc |
307 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
843170 |
tgttaatcatcaacaagcatcatagtaaa-ctaaaacttcaaagaaactaagtttgtcacttgcatat----aggtttcttcctaaacaataagggaggc |
843264 |
T |
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| Q |
308 |
tctgtggtgaagaacatgaaatacatacagatgtattcatcatatccttactatatatacacatgcatggtaaaacatgtcacaacaaa |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
843265 |
tctgtggtgaagaacatgaaatacatacagatgtattcatcatatccttac----tatacacatgcattgtaaaacatgtcacaacaaa |
843349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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