View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1300-Insertion-5 (Length: 666)

Name: NF1300-Insertion-5
Description: NF1300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1300-Insertion-5
NF1300-Insertion-5
[»] chr6 (1 HSPs)
chr6 (8-664)||(1726400-1727056)


Alignment Details
Target: chr6 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 8 - 664
Target Start/End: Complemental strand, 1727056 - 1726400
Alignment:
Q  8 aaacttaaatctcttattcattcacttgatagtttgatctccagcagctatttaacctaaaaaatattgtcacgagctcatcgcaaaacataattaacca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  1727056 aaacttaaatctcttattcattcacttgatagtttgatctccagcagctatttaacctaaaaaatattgtcacgagctcatcgcaaaacataattaatca 1726957  T
Q  108 aattaaatctcttactcatgtgtgctaagtatcaccattatttgaaagagtcgcgatttgaataagttttaatcaacttgagagatctaatctccactag 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1726956 aattaaatctcttactcatgtgtgctaagtatcaccattatttgaaagagtcacgatttgaataagttttaatcaacttgagagatctaatctccactag 1726857  T
Q  208 atagtgcctgccaaaattctatttgatagagtcacgatttgaattttttactatttactttacttgaaccgaatagttaccacctactaaacttggtaaa 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1726856 atagtgcctgccaaaattctatttgatagagtcacgatttgaattttttactatttactttatttgaaccgaatagttaccacctactaaacttggtaaa 1726757  T
Q  308 cacacgctacatgttagaataatgtacattgctctctaaagaagtatcattcttctagtgtttttggtggagtgaatgtaccattatatatggtgggact 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1726756 cacacgctacatgttagaataatgtacattgctctctaaagaagtatcattcttctagtgtttttggtggagtgaatgtaccattatatatggtgggact 1726657  T
Q  408 taataacctaagggtgnnnnnnncttttttatgataatgttaaatgaatttgaattttactccttcaaaacaattcaaaggatgaagatgttcaaacaca 507  Q
    ||||||||||||||||       |||||||||||||||||||||| ||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||    
T  1726656 taataacctaagggtgaaaataacttttttatgataatgttaaataaatttgaattttactcctttaaagcaatttaaaggatgaagatgttcaaacaca 1726557  T
Q  508 caaagatatatgtatgtgtctatacacattagactagaaactttcacaatatagagctcaatatattcgacttttacgatgaaatcgaaggtacatttaa 607  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  1726556 caaagatatatgtatgtgtctatacacactagattagaaactttcacaatattgagcttaatatattcgacttttacgatgaaatcgaaggtacatttaa 1726457  T
Q  608 caagttcaagacttatatcacttatgcatgtaaagattaatcttcagattctctctc 664  Q
    ||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  1726456 caaattcaagacttatatcacttatgcatgtaaagattaatcttcggatactctctc 1726400  T

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