View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1300-Insertion-7 (Length: 501)

Name: NF1300-Insertion-7
Description: NF1300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1300-Insertion-7
NF1300-Insertion-7
[»] chr2 (2 HSPs)
chr2 (11-501)||(43923821-43924313)
chr2 (293-342)||(7959635-7959684)
[»] chr5 (6 HSPs)
chr5 (219-342)||(19242396-19242531)
chr5 (217-282)||(12560129-12560195)
chr5 (219-342)||(9211391-9211526)
chr5 (219-282)||(9369959-9370023)
chr5 (292-333)||(12556973-12557014)
chr5 (219-266)||(38783816-38783864)
[»] chr3 (12 HSPs)
chr3 (219-342)||(26640710-26640845)
chr3 (219-354)||(20798762-20798910)
chr3 (219-282)||(9450694-9450758)
chr3 (219-282)||(17724543-17724607)
chr3 (219-282)||(19025772-19025836)
chr3 (219-282)||(28838474-28838538)
chr3 (291-342)||(28838403-28838454)
chr3 (292-342)||(9450779-9450829)
chr3 (292-342)||(17724628-17724678)
chr3 (292-342)||(19025857-19025907)
chr3 (291-333)||(28830447-28830489)
chr3 (219-282)||(28830509-28830573)
[»] chr1 (4 HSPs)
chr1 (219-282)||(35923230-35923294)
chr1 (219-265)||(1466767-1466814)
chr1 (291-342)||(1466851-1466902)
chr1 (292-342)||(35923315-35923365)
[»] chr7 (6 HSPs)
chr7 (219-282)||(19538846-19538910)
chr7 (291-342)||(19545426-19545477)
chr7 (240-282)||(19551984-19552026)
chr7 (291-333)||(47228607-47228649)
chr7 (291-328)||(47465706-47465743)
chr7 (219-282)||(19545497-19545561)


Alignment Details
Target: chr2 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 11 - 501
Target Start/End: Complemental strand, 43924313 - 43923821
Alignment:
Q  11 tgttcataagcataatctttaacgacagagagaaaaacmagataaaaatgaagaaaacataatagatgtgatgcgatgaggaaaaagtaagacaaaaatc 110  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  43924313 tgttcataagcataatctttaacgacagagagaaaaacaagataaaaatgaagaaaacataatagatgtgatgcgatgaggaaaaagtaagacaaaaacc 43924214  T
Q  111 tgaataaattactaacaaagtaatacaatatatattacattttttacaaatataacatagacatttcattaggccagcggtaaaagcataaagtaagcat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43924213 tgaataaattactaacaaagtaatacaatatatattacattttttacaaatataacatagacatttcattaggccagcggtaaaagcataaagtaagcat 43924114  T
Q  211 gataagtcacttacctgaatggggtcaatggtgatcaagaaggcccatgacctaggcaagtgaccttcattgggttctaatctaaggtctactcaaatgg 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||| |||    
T  43924113 gataagtcacttacctgaatggggtcaatggtgatcaagaaggcccatggcctaggcaagtgaccttcattgggttctagtttaaggtctactcaagtgg 43924014  T
Q  311 tggagcctacattataatttgttccagt-ggggttgcgttcgcgcgcaactcgctctnnnnnnnnggtaagcatgataagtacatgtgttcatatcatta 409  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||    
T  43924013 tggagcctacattataatttgttccagtagggtttgcgttcgcgcgcaactcgctctaaaaaaaaggtaagcatgataagtacatgtgttcatatcatta 43923914  T
Q  410 tgatactctct-gcacaatgaatggatggtggcccttcttagcacgagttatccaagccacaagatcatcgccggtgaaggacaacaactcca 501  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43923913 tgatactctctagcacaatgaatggatggtgacccttcttagcacgagttatccaagccacaagatcatcgccggtgaaggacaacaactcca 43923821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 342
Target Start/End: Complemental strand, 7959684 - 7959635
Alignment:
Q  293 taaggtctactcaaatggtggagcctacattataatttgttccagtgggg 342  Q
    |||||||||  ||||||||||||||||||| |||||||||| | ||||||    
T  7959684 taaggtctatccaaatggtggagcctacatcataatttgttgctgtgggg 7959635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 219 - 342
Target Start/End: Complemental strand, 19242531 - 19242396
Alignment:
Q  219 acttacctgaatggggtcaatgg-tgatcaagaaggcccatgacctaggcaagtgaccttcatt-----------gggttctaatctaaggtctactcaa 306  Q
    ||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||| ||||           |||| ||| |||||||||||| |||    
T  19242531 acttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggcaagtgacctccattgcacttaggaggggtgctagtctaaggtctacccaa 19242432  T
Q  307 atggtggagcctacattataatttgttccagtgggg 342  Q
     ||||||||||||||| |||||||||| ||| ||||    
T  19242431 gtggtggagcctacatcataatttgttgcagcgggg 19242396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 217 - 282
Target Start/End: Original strand, 12560129 - 12560195
Alignment:
Q  217 tcacttacctgaatggggtcaatgg-tgatcaagaaggcccatgacctaggcaagtgaccttcattg 282  Q
    ||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||| |||||    
T  12560129 tcacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggcaagtgacctccattg 12560195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 219 - 342
Target Start/End: Complemental strand, 9211526 - 9211391
Alignment:
Q  219 acttacctgaatggggtcaatgg-tgatcaagaaggcccatgacctaggcaagtgaccttcattg-----------ggttctaatctaaggtctactcaa 306  Q
    ||||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||           ||| |||  ||||||||||| |||    
T  9211526 acttacctggatggggtcaatgggtgatcaggaaggcccatggcctaggcaagtgaccttcattgcactttgaagaggtgctagcctaaggtctacccaa 9211427  T
Q  307 atggtggagcctacattataatttgttccagtgggg 342  Q
     ||||||||||||||| |||||||||| | ||||||    
T  9211426 gtggtggagcctacatcataatttgttgctgtgggg 9211391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 219 - 282
Target Start/End: Original strand, 9369959 - 9370023
Alignment:
Q  219 acttacctgaatggggtcaatgg-tgatcaagaaggcccatgacctaggcaagtgaccttcattg 282  Q
    ||||||||| ||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||    
T  9369959 acttacctggatggggtcaatgggtgatcaaaaaggcccatggcctaggcaagtgaccttcattg 9370023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 292 - 333
Target Start/End: Original strand, 12556973 - 12557014
Alignment:
Q  292 ctaaggtctactcaaatggtggagcctacattataatttgtt 333  Q
    ||||||||||||||| ||||||||||||||| ||||||||||    
T  12556973 ctaaggtctactcaagtggtggagcctacatcataatttgtt 12557014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 266
Target Start/End: Original strand, 38783816 - 38783864
Alignment:
Q  219 acttacctgaatggggtcaatgg-tgatcaagaaggcccatgacctagg 266  Q
    ||||||||| ||||||||||||| |||||||||||| ||||| ||||||    
T  38783816 acttacctggatggggtcaatggatgatcaagaaggtccatggcctagg 38783864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 342
Target Start/End: Original strand, 26640710 - 26640845
Alignment:
Q  219 acttacctgaatggggtcaatgg-tgatcaagaaggcccatgacctaggcaagtgaccttcatt-----------gggttctaatctaaggtctactcaa 306  Q
    ||||||||| |||||||| |||| |||||||||||||||||| ||||| |||||||||| ||||           |||| ||| |||||||||||| |||    
T  26640710 acttacctggatggggtcgatgggtgatcaagaaggcccatggcctagacaagtgacctccattgcacttaggaggggtgctagtctaaggtctacccaa 26640809  T
Q  307 atggtggagcctacattataatttgttccagtgggg 342  Q
     ||||||| ||||||| |||||||||| ||||||||    
T  26640810 gtggtggaacctacatcataatttgttgcagtgggg 26640845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 354
Target Start/End: Complemental strand, 20798910 - 20798762
Alignment:
Q  219 acttacctgaatggggtcaatgg-tgatcaagaaggcccatgacctaggcaagtgaccttcattg-----------ggttctaatctaaggtctactcaa 306  Q
    ||||||||| ||||||||||||| |||||||||| |  |||| |||||||||||||||| |||||           ||| |||  ||||||||||| |||    
T  20798910 acttacctggatggggtcaatgggtgatcaagaatgttcatggcctaggcaagtgacctccattgcacttaggaaaggtgctagcctaaggtctacccaa 20798811  T
Q  307 atggtggagcctacattataatttgttccagtgggg-ttgcgttcgcgc 354  Q
     ||||||||||||||| |||||||||| ||| |||| ||||||||||||    
T  20798810 gtggtggagcctacatcataatttgttgcagcggggcttgcgttcgcgc 20798762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 282
Target Start/End: Original strand, 9450694 - 9450758
Alignment:
Q  219 acttacctgaatggggtcaatgg-tgatcaagaaggcccatgacctaggcaagtgaccttcattg 282  Q
    ||||||||| ||||||||||||| |||||||||||||||||| |||||| | ||||||| |||||    
T  9450694 acttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgacctccattg 9450758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 282
Target Start/End: Original strand, 17724543 - 17724607
Alignment:
Q  219 acttacctgaatggggtcaatgg-tgatcaagaaggcccatgacctaggcaagtgaccttcattg 282  Q
    ||||||||| ||||||||||||| |||||||||||||||||| |||||| | ||||||| |||||    
T  17724543 acttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgacctccattg 17724607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 282
Target Start/End: Original strand, 19025772 - 19025836
Alignment:
Q  219 acttacctgaatggggtcaatgg-tgatcaagaaggcccatgacctaggcaagtgaccttcattg 282  Q
    ||||||||| ||||||||||||| |||||||||||||||||| |||||| | ||||||| |||||    
T  19025772 acttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgacctccattg 19025836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 282
Target Start/End: Complemental strand, 28838538 - 28838474
Alignment:
Q  219 acttacctgaatggggtcaatgg-tgatcaagaaggcccatgacctaggcaagtgaccttcattg 282  Q
    ||||||||| ||||||||||||| |||||||||||||||||| |||||| | ||||||| |||||    
T  28838538 acttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgacctccattg 28838474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 342
Target Start/End: Complemental strand, 28838454 - 28838403
Alignment:
Q  291 tctaaggtctactcaaatggtggagcctacattataatttgttccagtgggg 342  Q
    |||||||||||| ||| ||||||||||||||| |||||||||| | ||||||    
T  28838454 tctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggg 28838403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 342
Target Start/End: Original strand, 9450779 - 9450829
Alignment:
Q  292 ctaaggtctactcaaatggtggagcctacattataatttgttccagtgggg 342  Q
    ||||||||||| ||| ||||||||||||||| |||||||||| | ||||||    
T  9450779 ctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggg 9450829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 342
Target Start/End: Original strand, 17724628 - 17724678
Alignment:
Q  292 ctaaggtctactcaaatggtggagcctacattataatttgttccagtgggg 342  Q
    ||||||||||| ||| ||||||||||||||| |||||||||| | ||||||    
T  17724628 ctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggg 17724678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 342
Target Start/End: Original strand, 19025857 - 19025907
Alignment:
Q  292 ctaaggtctactcaaatggtggagcctacattataatttgttccagtgggg 342  Q
    ||||||||||| ||| ||||||||||||||| |||||||||| | ||||||    
T  19025857 ctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggg 19025907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 333
Target Start/End: Complemental strand, 28830489 - 28830447
Alignment:
Q  291 tctaaggtctactcaaatggtggagcctacattataatttgtt 333  Q
    |||||||||||| ||| ||||||||||||||| ||||||||||    
T  28830489 tctaaggtctacccaagtggtggagcctacatcataatttgtt 28830447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 282
Target Start/End: Complemental strand, 28830573 - 28830509
Alignment:
Q  219 acttacctgaatggggtcaatgg-tgatcaagaaggcccatgacctaggcaagtgaccttcattg 282  Q
    ||||||||| ||||||||||||| |||||||||||| ||||| |||||  | ||||||| |||||    
T  28830573 acttacctggatggggtcaatggatgatcaagaaggtccatggcctagaaaggtgacctccattg 28830509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 219 - 282
Target Start/End: Original strand, 35923230 - 35923294
Alignment:
Q  219 acttacctgaatggggtcaatgg-tgatcaagaaggcccatgacctaggcaagtgaccttcattg 282  Q
    ||||||||| ||||||||||||| |||||| ||||||||||| |||||||||||||||| |||||    
T  35923230 acttacctggatggggtcaatgggtgatcatgaaggcccatggcctaggcaagtgacctccattg 35923294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 265
Target Start/End: Original strand, 1466767 - 1466814
Alignment:
Q  219 acttacctgaatggggtcaatgg-tgatcaagaaggcccatgacctag 265  Q
    ||||||||| ||||||||||||| |||||||||||||||||| |||||    
T  1466767 acttacctggatggggtcaatgggtgatcaagaaggcccatggcctag 1466814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 342
Target Start/End: Original strand, 1466851 - 1466902
Alignment:
Q  291 tctaaggtctactcaaatggtggagcctacattataatttgttccagtgggg 342  Q
    |||||||||||| ||| ||||||||||||||| |||||||||| | ||||||    
T  1466851 tctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggg 1466902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 342
Target Start/End: Original strand, 35923315 - 35923365
Alignment:
Q  292 ctaaggtctactcaaatggtggagcctacattataatttgttccagtgggg 342  Q
    ||||||||||| ||| ||||||||||||||| |||||||||| | ||||||    
T  35923315 ctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggg 35923365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 282
Target Start/End: Complemental strand, 19538910 - 19538846
Alignment:
Q  219 acttacctgaatggggtcaatgg-tgatcaagaaggcccatgacctaggcaagtgaccttcattg 282  Q
    ||||||||| ||||||||||||| |||||| ||||||||||| |||||| ||||||||| |||||    
T  19538910 acttacctggatggggtcaatgggtgatcacgaaggcccatggcctaggaaagtgacctccattg 19538846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 342
Target Start/End: Complemental strand, 19545477 - 19545426
Alignment:
Q  291 tctaaggtctactcaaatggtggagcctacattataatttgttccagtgggg 342  Q
    |||||||||||| ||| ||||||||||||||| |||||||||| | ||||||    
T  19545477 tctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggg 19545426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 19552026 - 19551984
Alignment:
Q  240 ggtgatcaagaaggcccatgacctaggcaagtgaccttcattg 282  Q
    |||||||||||||||||||||||||| | |||||||| |||||    
T  19552026 ggtgatcaagaaggcccatgacctagacgagtgacctccattg 19551984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 333
Target Start/End: Original strand, 47228607 - 47228649
Alignment:
Q  291 tctaaggtctactcaaatggtggagcctacattataatttgtt 333  Q
    |||||||||||  ||| ||||||||||||||||||||||||||    
T  47228607 tctaaggtctatccaagtggtggagcctacattataatttgtt 47228649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 328
Target Start/End: Complemental strand, 47465743 - 47465706
Alignment:
Q  291 tctaaggtctactcaaatggtggagcctacattataat 328  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  47465743 tctaaggtctactcaagtggtggagcctacatcataat 47465706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 282
Target Start/End: Complemental strand, 19545561 - 19545497
Alignment:
Q  219 acttacctgaatggggtcaat-ggtgatcaagaaggcccatgacctaggcaagtgaccttcattg 282  Q
    ||||||||| ||||||||||| |||||||| ||||||| ||| |||||  ||||||||| |||||    
T  19545561 acttacctggatggggtcaatgggtgatcatgaaggcctatggcctagaaaagtgacctccattg 19545497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University