View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13000_high_13 (Length: 352)
Name: NF13000_high_13
Description: NF13000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13000_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 3 - 334
Target Start/End: Original strand, 45597146 - 45597477
Alignment:
| Q |
3 |
tagggcatagttgttaaagacgttttggtgagaaaatatggaatatggagtgaagaaatcaaagagttagctagtgcctaacttgcatcgtgggctatga |
102 |
Q |
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| T |
45597146 |
tagggcatagttgttaaagacgttttggtgagaaaatatggaatatggagtgaagaaatcaaagaggcagctagtgcctaacttgcatcgcgggctatga |
45597245 |
T |
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| Q |
103 |
acctcgcatcgtgagaatataatgcaaatcaaggagaagctctcgacacaacattgaaggacatgggagaggtggtgcggagatggaagcttctaatcgt |
202 |
Q |
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| T |
45597246 |
acctcgcatcgtgagaatataatgcaaatcaaggagaagctctcgacacaacatcgaaggacatgggagaggtggtgcggagatggaagcttctaatcgt |
45597345 |
T |
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| Q |
203 |
accaccatcagtagcaattacatcttgaagggtgagatttggatgatcgggtaaggcggtggagaagatttgtgtttggttggagagaagtcggagatcg |
302 |
Q |
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| T |
45597346 |
accaccatcagtagcaattacatcttgaagggtgagatttggatgatcgggtaaggcggtggagaagatttgtgtttggttagagagaagtcggagatcg |
45597445 |
T |
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| Q |
303 |
ataaggctagagggagagaataggtatcaatt |
334 |
Q |
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| T |
45597446 |
ataaggctagagggagagaataggtatcaatt |
45597477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 253 - 314
Target Start/End: Original strand, 32869320 - 32869381
Alignment:
| Q |
253 |
gtaaggcggtggagaagatttgtgtttggttggagagaagtcggagatcgataaggctagag |
314 |
Q |
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| T |
32869320 |
gtaaggtggtggagaaggtttgtgtttggttagagagaagtcggagaatgataaggctagag |
32869381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 288
Target Start/End: Complemental strand, 29535304 - 29535226
Alignment:
| Q |
214 |
tagcaattacatcttg----aagggtgagatttggatgatcgggtaaggcggtggagaagatttgtgtttggttggaga |
288 |
Q |
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|||||||||||||||| |||| ||||||||||||||| | |||||| |||||||||| ||||| ||||||| |||| |
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| T |
29535304 |
tagcaattacatcttggtcgaaggatgagatttggatgattgagtaaggtggtggagaaggtttgtatttggttagaga |
29535226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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