View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13000_high_30 (Length: 251)
Name: NF13000_high_30
Description: NF13000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13000_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 46 - 234
Target Start/End: Original strand, 26573306 - 26573494
Alignment:
| Q |
46 |
tgaaatgatttacaaaagagaacacagaaaggctaaagcagatagaaaatgcataagaaacaaacaaacatcctataattcacttataaatatgaaataa |
145 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26573306 |
tgaaatgatttacaaaagagaacacagaaaggctaaagcagatagaaaatgcataagaaacaaacaaacatcctataattcacttataaatatgaaataa |
26573405 |
T |
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| Q |
146 |
agggatagacagttgcttaaaacgaagcattacccatcacagttgcaattcaactcaaagtaatgcaatactaatgtttatcacagtat |
234 |
Q |
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| T |
26573406 |
agggatagacagttgcttaaaacgaagcattacccatcacagttgcaattcaactcaaagtaatgcaaaactaatgcttatcacagtat |
26573494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 46 - 235
Target Start/End: Original strand, 10350591 - 10350776
Alignment:
| Q |
46 |
tgaaatgatttacaaaagagaacacagaaaggctaaagcagatagaaaatgcataagaaacaaacaaacatcctataattcacttataaatatgaaataa |
145 |
Q |
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||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
10350591 |
tgaaatgatttacaaaagagaacccagaaaggctgcagcaaatagaaaatgcataagaatcaaa----catcctataattcacttataaatatgaaataa |
10350686 |
T |
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| Q |
146 |
agggatagacagttgcttaaaacgaagcattacccatcacagttgcaattcaactcaaagtaatgcaatactaatgtttatcacagtatt |
235 |
Q |
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| T |
10350687 |
agggatacacagttgcttaaaacttagtatcacccatcacagttgcaattcaactcaaagtaatggaatactaatgcttatcacagtatt |
10350776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 46 - 198
Target Start/End: Original strand, 10346100 - 10346250
Alignment:
| Q |
46 |
tgaaatgatttacaaaagagaacacagaaaggctaaagcagatagaaaatgcataagaaacaaacaaacatcctataattcacttataaatatgaaataa |
145 |
Q |
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|||||| |||||||||||||||| ||||| | | ||||| ||||||||||||| ||||||||||| | ||||||||||||| ||| |||||| ||||| |
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| T |
10346100 |
tgaaattatttacaaaagagaaccaagaaaagatgaagcaaatagaaaatgcatcagaaacaaacaga--tcctataattcacgtattaatatggaataa |
10346197 |
T |
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| Q |
146 |
agggatagacagttgcttaaaacgaagcattacccatcacagttgcaattcaa |
198 |
Q |
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||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10346198 |
agggagacgcagttgcttaaaacgaagcattacccatcacagttgcaattcaa |
10346250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 10339647 - 10339724
Alignment:
| Q |
46 |
tgaaatgatttacaaaagagaacacagaaaggctaaagcagatagaaaatgcataagaaacaaacaaacatcctataa |
123 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
10339647 |
tgaaatgatttacaaaagagaacccagaaaggctaaagcaaatagaaaatgcataagaaacaaacaaaaatcctataa |
10339724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 156 - 230
Target Start/End: Original strand, 10370364 - 10370438
Alignment:
| Q |
156 |
agttgcttaaaacgaagcattacccatcacagttgcaattcaactcaaagtaatgcaatactaatgtttatcaca |
230 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||| |||| || | ||||| |||||||| |
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| T |
10370364 |
agttgcttaaaacaaagcattacccatcacagttgcaattcaactcaaactaatacagcattaatgcttatcaca |
10370438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 207
Target Start/End: Original strand, 10339902 - 10339943
Alignment:
| Q |
166 |
aacgaagcattacccatcacagttgcaattcaactcaaagta |
207 |
Q |
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||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
10339902 |
aacgaagcattactcatcatagttgcaattcaactcaaagta |
10339943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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