View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13000_high_31 (Length: 250)

Name: NF13000_high_31
Description: NF13000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13000_high_31
NF13000_high_31
[»] chr7 (1 HSPs)
chr7 (13-250)||(47639362-47639596)
[»] chr3 (4 HSPs)
chr3 (13-71)||(48861241-48861299)
chr3 (22-64)||(31311516-31311558)
chr3 (24-71)||(52201346-52201390)
chr3 (22-62)||(53706669-53706709)
[»] chr1 (6 HSPs)
chr1 (18-71)||(5302377-5302430)
chr1 (13-69)||(14321033-14321089)
chr1 (13-64)||(24084198-24084249)
chr1 (13-63)||(35838333-35838383)
chr1 (24-64)||(44107746-44107786)
chr1 (14-62)||(34767329-34767377)
[»] chr5 (3 HSPs)
chr5 (13-68)||(4828887-4828942)
chr5 (29-69)||(26362490-26362530)
chr5 (13-64)||(39075052-39075100)
[»] chr4 (10 HSPs)
chr4 (13-64)||(32004466-32004517)
chr4 (13-64)||(779789-779841)
chr4 (13-64)||(46737300-46737351)
chr4 (22-64)||(52708514-52708556)
chr4 (22-71)||(55292303-55292352)
chr4 (13-64)||(16467859-16467910)
chr4 (24-71)||(35803526-35803573)
chr4 (13-71)||(47769699-47769755)
chr4 (14-52)||(53920205-53920243)
chr4 (27-64)||(38179888-38179925)
[»] chr6 (3 HSPs)
chr6 (13-64)||(9062864-9062915)
chr6 (13-60)||(31247749-31247796)
chr6 (26-60)||(31238379-31238413)
[»] chr2 (2 HSPs)
chr2 (13-71)||(37807284-37807342)
chr2 (13-61)||(32810053-32810101)
[»] chr8 (2 HSPs)
chr8 (27-64)||(11517592-11517629)
chr8 (22-58)||(32668123-32668159)


Alignment Details
Target: chr7 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 47639596 - 47639362
Alignment:
Q  13 aatataaaattttcattaaaaacaacaactttttgactttgataaagttaaatatttcannnnnnnnnatcaattttcaacaaataatttctatattaat 112  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||         ||||||||||||  ||||||||||||||||||    
T  47639596 aatagaaaattttcattaaaaacaacaactttttgacttttataaagttaaacatttcatttttc---atcaattttcaatgaataatttctatattaat 47639500  T
Q  113 attcttaaggtactagttaacattttccttgnnnnnnnttaagtatcatgagtacaagcgtacaactatggagatttttaaggtgattgaaatctattta 212  Q
    ||||||| | |||||||||||||||||||||       ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |    
T  47639499 attcttaggatactagttaacattttccttgaaaaaaattaagtatcatgagtacaagcgtacaactatagagatttttaaggtgattgaaatctagtca 47639400  T
Q  213 aaggattaagacgtcttttgtgatatatttttccattc 250  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  47639399 aaggattaagacgtcttttttgatatatttttccattc 47639362  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 48861299 - 48861241
Alignment:
Q  13 aatataaaattttcattaaaaacaacaactttttgactttgataaagttaaatatttca 71  Q
    |||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  48861299 aatagaaaattttcattaaaaacaacaattttttgacttttataaagttaaatatttca 48861241  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 31311558 - 31311516
Alignment:
Q  22 ttttcattaaaaacaacaactttttgactttgataaagttaaa 64  Q
    ||||||||||||||| ||||||||||||||| ||||| |||||    
T  31311558 ttttcattaaaaacatcaactttttgactttcataaaattaaa 31311516  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 52201390 - 52201346
Alignment:
Q  24 ttcattaaaaacaacaactttttgactttgataaagttaaatatttca 71  Q
    ||||||||||||||||||||||||||||   |||||||||| ||||||    
T  52201390 ttcattaaaaacaacaactttttgactt---taaagttaaacatttca 52201346  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 53706709 - 53706669
Alignment:
Q  22 ttttcattaaaaacaacaactttttgactttgataaagtta 62  Q
    |||| ||||||||||| |||||||||||||| |||||||||    
T  53706709 tttttattaaaaacaataactttttgactttaataaagtta 53706669  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 5302377 - 5302430
Alignment:
Q  18 aaaattttcattaaaaacaacaactttttgactttgataaagttaaatatttca 71  Q
    ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  5302377 aaaattttcattaaaaacaacaattttttaactttcataaagttaaatatttca 5302430  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 14321033 - 14321089
Alignment:
Q  13 aatataaaattttcattaaaaacaacaactttttgactttgataaagttaaatattt 69  Q
    |||| ||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||    
T  14321033 aatagaaaattttcattaaaaacaacaacttttttactttcataaaattaaacattt 14321089  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 24084249 - 24084198
Alignment:
Q  13 aatataaaattttcattaaaaacaacaactttttgactttgataaagttaaa 64  Q
    |||| ||||||||||| ||||||||||| ||||||||||| |||||||||||    
T  24084249 aatagaaaattttcatcaaaaacaacaattttttgactttcataaagttaaa 24084198  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 35838333 - 35838383
Alignment:
Q  13 aatataaaattttcattaaaaacaacaactttttgactttgataaagttaa 63  Q
    ||||||||||||| |||||||| ||||| ||||||||||| ||||||||||    
T  35838333 aatataaaatttttattaaaaataacaattttttgactttcataaagttaa 35838383  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 44107786 - 44107746
Alignment:
Q  24 ttcattaaaaacaacaactttttgactttgataaagttaaa 64  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  44107786 ttcattaaaaacaacaactttttgactttcataaaggtaaa 44107746  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 34767377 - 34767329
Alignment:
Q  14 atataaaattttcattaaaaacaacaactttttgactttgataaagtta 62  Q
    ||||||||||||||||||||| || || ||||||||||| ||| |||||    
T  34767377 atataaaattttcattaaaaataataattttttgacttttatatagtta 34767329  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 4828887 - 4828942
Alignment:
Q  13 aatataaaattttcattaaaaacaacaactttttgactttgataaagttaaatatt 68  Q
    |||| |||||||||||||||||||||||| |||| ||||| |||||||||||||||    
T  4828887 aatagaaaattttcattaaaaacaacaaccttttaactttcataaagttaaatatt 4828942  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 26362530 - 26362490
Alignment:
Q  29 taaaaacaacaactttttgactttgataaagttaaatattt 69  Q
    |||||||||||||||||||||||| |||||||| |||||||    
T  26362530 taaaaacaacaactttttgactttcataaagttgaatattt 26362490  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 39075100 - 39075052
Alignment:
Q  13 aatataaaattttcattaaaaacaacaactttttgactttgataaagttaaa 64  Q
    |||| |||||||||||||||||||||   ||||||||||| |||||||||||    
T  39075100 aatagaaaattttcattaaaaacaac---tttttgacttttataaagttaaa 39075052  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 32004517 - 32004466
Alignment:
Q  13 aatataaaattttcattaaaaacaacaactttttgactttgataaagttaaa 64  Q
    |||| |||| |||||||||||||||||||||||||||||| |||||||||||    
T  32004517 aatagaaaaatttcattaaaaacaacaactttttgactttcataaagttaaa 32004466  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 779841 - 779789
Alignment:
Q  13 aatataaaattttcattaaaaacaacaact-ttttgactttgataaagttaaa 64  Q
    |||| ||||||||||||||||||||||||| |||||||||| |||||||||||    
T  779841 aatagaaaattttcattaaaaacaacaacttttttgactttcataaagttaaa 779789  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 46737351 - 46737300
Alignment:
Q  13 aatataaaattttcattaaaaacaacaactttttgactttgataaagttaaa 64  Q
    |||| |||||||||||||||||||| |||||||||| ||| |||||||||||    
T  46737351 aatagaaaattttcattaaaaacaataactttttgattttcataaagttaaa 46737300  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 52708514 - 52708556
Alignment:
Q  22 ttttcattaaaaacaacaactttttgactttgataaagttaaa 64  Q
    |||| |||||||||||||||||||||||||| |||||||||||    
T  52708514 tttttattaaaaacaacaactttttgactttcataaagttaaa 52708556  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 55292303 - 55292352
Alignment:
Q  22 ttttcattaaaaacaacaactttttgactttgataaagttaaatatttca 71  Q
    ||||||||||||||||||||||||||| ||| ||||| ||||| ||||||    
T  55292303 ttttcattaaaaacaacaactttttgattttcataaaattaaacatttca 55292352  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 16467859 - 16467910
Alignment:
Q  13 aatataaaattttcattaaaaacaacaactttttgactttgataaagttaaa 64  Q
    |||| |||| ||||||||||||||| |||||||| ||||| |||||||||||    
T  16467859 aataaaaaaatttcattaaaaacaataacttttttactttcataaagttaaa 16467910  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 35803526 - 35803573
Alignment:
Q  24 ttcattaaaaacaacaactttttgactttgataaagttaaatatttca 71  Q
    ||||||||||||||||| ||||| || || ||||||||||||||||||    
T  35803526 ttcattaaaaacaacaattttttaacgtttataaagttaaatatttca 35803573  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 47769755 - 47769699
Alignment:
Q  13 aatataaaattttcattaaaaacaacaactttttgactttgataaagttaaatatttca 71  Q
    ||||||||||||||||||||||||  || ||||||| ||| ||||||||||| ||||||    
T  47769755 aatataaaattttcattaaaaaca--aattttttgatttttataaagttaaacatttca 47769699  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 53920205 - 53920243
Alignment:
Q  14 atataaaattttcattaaaaacaacaactttttgacttt 52  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  53920205 atataaatttttcattaaagacaacaactttttgacttt 53920243  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 38179925 - 38179888
Alignment:
Q  27 attaaaaacaacaactttttgactttgataaagttaaa 64  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  38179925 attaaaaacatcaactttttgactttcataaagttaaa 38179888  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 9062864 - 9062915
Alignment:
Q  13 aatataaaattttcattaaaaacaacaactttttgactttgataaagttaaa 64  Q
    |||| |||||||||||||||||||||||||||||  |||| |||||||||||    
T  9062864 aatagaaaattttcattaaaaacaacaactttttatctttcataaagttaaa 9062915  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 31247796 - 31247749
Alignment:
Q  13 aatataaaattttcattaaaaacaacaactttttgactttgataaagt 60  Q
    |||| ||| ||| ||||||||||||||||||||||||||| |||||||    
T  31247796 aatagaaattttccattaaaaacaacaactttttgacttttataaagt 31247749  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 60
Target Start/End: Complemental strand, 31238413 - 31238379
Alignment:
Q  26 cattaaaaacaacaactttttgactttgataaagt 60  Q
    ||||||||||||||||||||||||||| |||||||    
T  31238413 cattaaaaacaacaactttttgacttttataaagt 31238379  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 37807342 - 37807284
Alignment:
Q  13 aatataaaattttcattaaaaacaacaactttttgactttgataaagttaaatatttca 71  Q
    |||| ||| |||| ||||||||||||| |||||||||||| ||||||||||| ||||||    
T  37807342 aatagaaattttttattaaaaacaacacctttttgactttcataaagttaaacatttca 37807284  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 32810101 - 32810053
Alignment:
Q  13 aatataaaattttcattaaaaacaacaactttttgactttgataaagtt 61  Q
    |||| |||| |||||| |||||||||||| |||||||||| ||||||||    
T  32810101 aataaaaaaatttcataaaaaacaacaacattttgacttttataaagtt 32810053  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 11517592 - 11517629
Alignment:
Q  27 attaaaaacaacaactttttgactttgataaagttaaa 64  Q
    |||||||||||||||||||||||||| |||||||||||    
T  11517592 attaaaaacaacaactttttgactttcataaagttaaa 11517629  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 32668123 - 32668159
Alignment:
Q  22 ttttcattaaaaacaacaactttttgactttgataaa 58  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  32668123 ttttcattaaaaacaacaaatttttgacttttataaa 32668159  T

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