View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13000_high_32 (Length: 241)

Name: NF13000_high_32
Description: NF13000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13000_high_32
NF13000_high_32
[»] chr2 (3 HSPs)
chr2 (18-241)||(32071899-32072120)
chr2 (18-239)||(32031432-32031651)
chr2 (18-239)||(32064567-32064786)


Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 32071899 - 32072120
Alignment:
Q  18 gtttgattttggagcctaaacgtttggctttgtattataagagtgaaatttcacctatgccaattaaatattggttttcatcttcttggttttcatttga 117  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32071899 gtttgattttggagcctaaaggtttggctttgtattataagagtgaaatttcacctatgccaattaaatattggttttcatcttcttggttttcatttga 32071998  T
Q  118 aaaaggctcattagaaaatgtcacattaaaatctgatcccgaatcttttgagtatggatttgannnnnnnnngttgccaattctaccacttttggtaaaa 217  Q
    ||||||||||||||||||||||||| | ||||||||||| ||||||||||||| |||||||||         ||||||||||||||||||| |||||  |    
T  32071999 aaaaggctcattagaaaatgtcacacttaaatctgatccagaatcttttgagtttggatttga--tttttttgttgccaattctaccacttctggtagta 32072096  T
Q  218 gtatcattggtaggccagtgaaga 241  Q
    ||||||||||||||||||||||||    
T  32072097 gtatcattggtaggccagtgaaga 32072120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 32031432 - 32031651
Alignment:
Q  18 gtttgattttggagcctaaacgtttggctttgtattataagagtgaaatttcacctatgccaattaaatattggttttcatcttcttggttttcatttga 117  Q
    ||||| |||||||||||||| |||||||||| ||||||||||||  || ||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  32031432 gtttggttttggagcctaaaggtttggctttatattataagagtacaaattctcctaggccaattaaatattggttttcatcttcttggttttcatttga 32031531  T
Q  118 aaaaggctcattagaaaatgtcacattaaaatctgatcccgaatcttttgagtatggatttgannnnnnnnngttgccaattctaccacttttggtaaaa 217  Q
    |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||         ||||||||||||||||||| |||||  |    
T  32031532 aaaaggttcattagaaaatgtcacactaaaatctgatccagaatcttttgagtatggatttga--tttttttgttgccaattctaccacttctggtagta 32031629  T
Q  218 gtatcattggtaggccagtgaa 239  Q
    ||||||||||||||||||||||    
T  32031630 gtatcattggtaggccagtgaa 32031651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 32064567 - 32064786
Alignment:
Q  18 gtttgattttggagcctaaacgtttggctttgtattataagagtgaaatttcacctatgccaattaaatattggttttcatcttcttggttttcatttga 117  Q
    ||||| ||||||| |||||| |||||||||| ||||||| ||||  || ||| |||| ||||| ||||||||||||||| ||||||||||||||||||||    
T  32064567 gtttggttttggaacctaaaggtttggctttatattataggagtacaaattctcctaggccaagtaaatattggttttcttcttcttggttttcatttga 32064666  T
Q  118 aaaaggctcattagaaaatgtcacattaaaatctgatcccgaatcttttgagtatggatttgannnnnnnnngttgccaattctaccacttttggtaaaa 217  Q
    ||||||||||||||||||||||||| | ||||||||||| ||||||||||||| |||||||||         ||| ||||||||||||||| ||| || |    
T  32064667 aaaaggctcattagaaaatgtcacacttaaatctgatccagaatcttttgagtttggatttga--ttttcatgttaccaattctaccacttctggcaata 32064764  T
Q  218 gtatcattggtaggccagtgaa 239  Q
    ||||||||||||||||||||||    
T  32064765 gtatcattggtaggccagtgaa 32064786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University