View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13000_high_35 (Length: 237)
Name: NF13000_high_35
Description: NF13000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13000_high_35 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 89 - 223
Target Start/End: Complemental strand, 15819441 - 15819307
Alignment:
| Q |
89 |
aatcgtatcatttcacttctggaaatcttgaatcaatacaaacctttgcctataaggtttttattcgattcaatcttcattctgaaattgctctttccat |
188 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
15819441 |
aatcgtatcatttcacttctgaaaactttgaatcaattcaaacctttgcctataaggtttttattcgattcaatcttcattctgaaattgctctttcgat |
15819342 |
T |
|
| Q |
189 |
tctactcaatcttcatgtcaaccaaagttctattt |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
15819341 |
tctactcaatcttcatgtcaaccaaagttctattt |
15819307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 177
Target Start/End: Original strand, 17060798 - 17060888
Alignment:
| Q |
87 |
tgaatcgtatcatttcacttctggaaatcttgaatcaatacaaacctttgcctataaggtttttattcgattcaatcttcattctgaaatt |
177 |
Q |
| |
|
||||||||||||||||||| || ||| |||||||| || ||||||||||| ||||||||| | || ||||||||||| ||||| ||||| |
|
|
| T |
17060798 |
tgaatcgtatcatttcactcctagaatccttgaatcgattcaaacctttgcttataaggttatgatctgattcaatcttaattctaaaatt |
17060888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 168
Target Start/End: Original strand, 12272265 - 12272346
Alignment:
| Q |
87 |
tgaatcgtatcatttcacttctggaaatcttgaatcaatacaaacctttgcctataaggtttttattcgattcaatcttcat |
168 |
Q |
| |
|
||||| |||| ||||||||| |||||| |||||||| || |||| ||||| |||| |||||| |||||| ||||||||||| |
|
|
| T |
12272265 |
tgaatagtatgatttcacttttggaaaccttgaatcgattcaaaactttggatatatggttttgattcgactcaatcttcat |
12272346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University