View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13000_high_5 (Length: 476)
Name: NF13000_high_5
Description: NF13000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13000_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 19 - 438
Target Start/End: Complemental strand, 48251902 - 48251478
Alignment:
| Q |
19 |
atttggcctaccttaaacagaaggtatcggtacacaaaccatccggtgtaccctagtcctaccaactccataatctttggaagctgaaaccgaaaataga |
118 |
Q |
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| T |
48251902 |
atttggcctaccttaaacagaaggtatcggtacacaaaccatccggtgtaccctagtcctaccaactccataatctttggaagctgaaaccgaaaataga |
48251803 |
T |
|
| Q |
119 |
attgtttcagattggttcaaaacgcctaataagggaacttaaaaaagcaagagtgatatggcttaccaaggggactgagttgatggcaccaacgagaatt |
218 |
Q |
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| T |
48251802 |
attgtttcagattggttcaaaacgcctaataagggaacttaaaaaagcaagagtgatatggcttaccaaggggactgagttgatggcaccaacgagaatt |
48251703 |
T |
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| Q |
219 |
gaagataaccaaacagcaactaaacctccaccaccatatagaagcactgtggacttgttttcaagcgcatcccactgataatgacaaatggatagtatta |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
48251702 |
gaagataaccaaacagcaactaaacctccaccaccatatagaagcactgtggacttgttttcaagcgcatcccactgataatgacaaatggttagtatta |
48251603 |
T |
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| Q |
319 |
cttctactttgttagtaaagctgtaaaagacatcaatgctgccaaagagaagattagcaccaacacttatgtgtttggtgtccgacacaacac-----cg |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
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| T |
48251602 |
cttctactttgttagtaaagctgtaaaagacatcaatgctgccaaagagaagattagcaccgacacttatgtgtttggtgtccgacacaacacaacaccg |
48251503 |
T |
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| Q |
414 |
ttgagtgtaattacattaattgttt |
438 |
Q |
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| T |
48251502 |
atgagtgtaattacattaattgttt |
48251478 |
T |
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