View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13000_low_1 (Length: 720)
Name: NF13000_low_1
Description: NF13000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13000_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 290
Target Start/End: Original strand, 28596268 - 28596537
Alignment:
| Q |
19 |
aacaaaaatgtttaaagaatttaactcacgaaaatgtatttaaagcgnnnnnnnttcggaagacctaatgtgagacctaaaaaatttgggggcatagaac |
118 |
Q |
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| T |
28596268 |
aacaaaaatgcttaaagaatttaactcacgaaaatgtatttaaagcgaaaaaaattcggaaggcctaatgtgagacctaaaaaatatgggggcata-aac |
28596366 |
T |
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| Q |
119 |
ccttaatttaaaggcaaccccttcagacttgctaatgtaatactattattctttaccttcaaatatagttatgttatgtttttaaggaatattttctttg |
218 |
Q |
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| T |
28596367 |
ccttattttaaaggcaaccccttcagacttgctaatgtaatactattattctttaccttcaaata-agttatgttatgtttttaacgaatattttctttg |
28596465 |
T |
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| Q |
219 |
aaaaaaggaatattgtcatttatggttgatgtgtcattaactaaaaaatcattcaacatatcaaagaatgtg |
290 |
Q |
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| T |
28596466 |
acaaaaggaatattgtcatttatgattgatgtgtcattaattaaaaaatcattcaatatatcaaagaatgtg |
28596537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 338 - 540
Target Start/End: Original strand, 28596585 - 28596786
Alignment:
| Q |
338 |
gcaacttataccccgtacataagatgaattccaaaactaattagtacattttaaactttttaattttgtttgtatttgtgagatgtgataatcgaatttg |
437 |
Q |
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| T |
28596585 |
gcaacttataccccgtacataagatgaattccaaaactaattagtacattttaaactttttaattttgtttgtatctgtgagatgtgataatcgaatttg |
28596684 |
T |
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| Q |
438 |
agactacacttgttnnnnnnnnnnnnnnncgagactacacttagcaaactatgttaactcttctatctcagttctcaaccagcagccaactttatatctc |
537 |
Q |
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| T |
28596685 |
agactacacttctt-aaaaaaaaaaaaaacgagactacacttagcacactatgttaactcttctatctcagttctcaaccagcagccaactttatatctc |
28596783 |
T |
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| Q |
538 |
taa |
540 |
Q |
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||| |
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| T |
28596784 |
taa |
28596786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 603 - 686
Target Start/End: Original strand, 28596850 - 28596935
Alignment:
| Q |
603 |
cttctttcaaataaaaagataaagtacttttatcnnnnnnn--gtgggcgtttagtaagcataacgactaatatgcaaaatagaat |
686 |
Q |
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| T |
28596850 |
cttctttcaaataaaaagataaagtacttttatcaaaaaaaaagtgggcgtttagtaagcataacgactaatatgcaaaatagaat |
28596935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 10229153 - 10229196
Alignment:
| Q |
22 |
aaaaatgtttaaagaatttaactcacgaaaatgtatttaaagcg |
65 |
Q |
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| T |
10229153 |
aaaaatgtttaaagaatttaactcacgaaaatatacttaaagcg |
10229196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 14217191 - 14217148
Alignment:
| Q |
21 |
caaaaatgtttaaagaatttaactcacgaaaatgtatttaaagc |
64 |
Q |
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||||||| ||||||||||||||||||| ||||| |||||||||| |
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| T |
14217191 |
caaaaatatttaaagaatttaactcacaaaaatatatttaaagc |
14217148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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