View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13000_low_10 (Length: 376)
Name: NF13000_low_10
Description: NF13000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13000_low_10 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 18 - 376
Target Start/End: Original strand, 12038190 - 12038542
Alignment:
| Q |
18 |
ctgatacggccatactcatcactacacgtagtaaccatgtcgcagacaacattgctgctggatatgttttgaagttgcaggggcttaatcaagaggattc |
117 |
Q |
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| T |
12038190 |
ctgatacggccatactcattactacacgtagtaaccatgtcgccgacaacattgctgctggacatgttttgaagttgcaggggcttaatcaagaggattc |
12038289 |
T |
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| Q |
118 |
ttggtccttgtttgaggaaattcatggagcagtttcaacttacagccaacactgcaccgcatcagagatcgtgagggattgtcgtggagtccctcttgca |
217 |
Q |
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| T |
12038290 |
ttggtccttgtttgaggaaattcatggagcagtttcaa------gccaacactgcaccacatttaagatcgtgagggattgtcgtggagtccctcttgca |
12038383 |
T |
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| Q |
218 |
atagtgatcgtagcgacatcgatgctctataatcacgagggctcgattctgcaaccagaacctcacatagagaagatgtttctacaaagtttcaggtata |
317 |
Q |
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| T |
12038384 |
atagtgatcgtagcgacagcgatgctctataatcgcgagggctcgattctgcaaccagaacctcacatagagaagatgtttctacaaagtttcaggtata |
12038483 |
T |
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| Q |
318 |
tctattacgaagatcttcccacgtatcagaagttgtgctttgcatattgttcattgttt |
376 |
Q |
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| T |
12038484 |
tctattacgaagatcttcccacgtatcagaagttgtgctttgcatattgttcattgttt |
12038542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 63 - 145
Target Start/End: Original strand, 11859452 - 11859534
Alignment:
| Q |
63 |
acaacattgctgctggatatgttttgaagttgcaggggcttaatcaagaggattcttggtccttgtttgaggaaattcatgga |
145 |
Q |
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| T |
11859452 |
acaaaattgctgctagacatgttttgaagttgcaggggcttaatcaagaggaatcttggtcattgtttcagcagattcatgga |
11859534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 130
Target Start/End: Original strand, 11827277 - 11827378
Alignment:
| Q |
29 |
atactcatcactacacgtagtaaccatgtcgcagacaacattgctgctggatatgttttgaagttgcaggggcttaatcaagaggattcttggtccttgt |
128 |
Q |
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| T |
11827277 |
atactcattaccacatgtagcaaccatgtcgccaacaatattggtgctacatatgttttgaagttgcaggggcttaatcaaaaggaatcttggtcattgt |
11827376 |
T |
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| Q |
129 |
tt |
130 |
Q |
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| T |
11827377 |
tt |
11827378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 316 - 376
Target Start/End: Original strand, 11827588 - 11827648
Alignment:
| Q |
316 |
tatctattacgaagatcttcccacgtatcagaagttgtgctttgcatattgttcattgttt |
376 |
Q |
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| T |
11827588 |
tatctattacgacgatcttcccacttatcagaaattatgctttgcatattgttcattgttt |
11827648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 316 - 376
Target Start/End: Original strand, 11859723 - 11859783
Alignment:
| Q |
316 |
tatctattacgaagatcttcccacgtatcagaagttgtgctttgcatattgttcattgttt |
376 |
Q |
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| T |
11859723 |
tatctattacgacaaccttcccacttatcagaagttatgcttcgcatattgttcattgttt |
11859783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 376
Target Start/End: Original strand, 11731396 - 11731452
Alignment:
| Q |
320 |
tattacgaagatcttcccacgtatcagaagttgtgctttgcatattgttcattgttt |
376 |
Q |
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| T |
11731396 |
tattacgaggatcttcccacatgttataaattgtgctttgcattttgttcattgttt |
11731452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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