View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13000_low_11 (Length: 374)
Name: NF13000_low_11
Description: NF13000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13000_low_11 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 33204301 - 33203928
Alignment:
| Q |
1 |
aaaattccaaactattcacaacaccacgacgaaaagacgccgccgctgcagcctccgtccatccttcaccgtcaacgaaaaccaccacaccaggagttat |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33204301 |
aaaactccaaactattcacaacaccacgacgaaaagacgccgctgctgcagcctccgtccatccttcaccgtcaacgaaaaccaccacaccaggagttat |
33204202 |
T |
|
| Q |
101 |
cctcctcacatccgaaagaaacgccgccgtaccatcggaaccaagtcgacagaatatcgccggcgttaacagaatcgcagttttctcaccgtcgacgaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33204201 |
cctcctcacatccgaaagaaacgccgccgtaccttcggaaccaagtcgacagaatatcgccggcgttaacagaatcgcagttttctcaccgtcgacgaat |
33204102 |
T |
|
| Q |
201 |
ctaaccgccttaaacgacaccgtctcaaaagtcctcaacggcacaaaatcaacctgaacacgaattccaaggtcatgcgcgaactgattcagattctcac |
300 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33204101 |
ctaaccgccttaaacgacaccgtttcaaaagtcctcaacggcacaaaatcaacctgaacacgaattccaaggtcatgcgcgaactgattcagattctcac |
33204002 |
T |
|
| Q |
301 |
gaatcaatctgctttcaacggcgtactcctccggcacgacggcggtgatacgaagcaacggcgaaccattaaca |
374 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33204001 |
gaatcaacctgctttcaacggcatactcctccggcacgacggcggtgatacgaagcaacggcgaaccgttaaca |
33203928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University