View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13000_low_12 (Length: 363)
Name: NF13000_low_12
Description: NF13000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13000_low_12 |
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| [»] scaffold0072 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 164 - 357
Target Start/End: Complemental strand, 46381300 - 46381107
Alignment:
| Q |
164 |
attattagcattaaagatgccaattcatacgtgcctgaccaagatagtggttaactatattcctaatatccgatgtgcaatggatggtgaagcaaataga |
263 |
Q |
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| T |
46381300 |
attattagcattaaagatgccaattcatacgtgcctgaccaagatagtggttaactatattcctaatatccgatgtgcaatggatggtgaagcaaataga |
46381201 |
T |
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| Q |
264 |
ttaagtcctttaatgtataacttttaatgcaaaccagaatcgtatatcttatttccaacagcctaatttaagtcacttcatcaattatattctt |
357 |
Q |
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| T |
46381200 |
ttaagtcctttaatgtataacttttaatgcaaaccagaatcgtatatcttatttccaacagcctaatttaagtcacttcatcaattattttctt |
46381107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 121; Significance: 6e-62; HSPs: 2)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 40570 - 40426
Alignment:
| Q |
18 |
aacagagtcctcagtgaactttctgttaggaatcctatgcctcattccacgtcttggtccctgtatctgtggattatgtgacatctgtccttcctcacct |
117 |
Q |
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||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||| |
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| T |
40570 |
aacagagtcctcattgaactttctgttaggaatcatatgcctcattccacgtcttggtccctggatctgtggattacgtgacatctgtccttcctctcct |
40471 |
T |
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| Q |
118 |
tctgcattagttactgcagtaattaccttggtcttatccataaca |
162 |
Q |
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| T |
40470 |
tctgcattagttactgcagtaatttccttggtcttatccataaca |
40426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 45402 - 45258
Alignment:
| Q |
18 |
aacagagtcctcagtgaactttctgttaggaatcctatgcctcattccacgtcttggtccctgtatctgtggattatgtgacatctgtccttcctcacct |
117 |
Q |
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||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||| |
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| T |
45402 |
aacagagtcctcattgaactttctgttaggaatcatatgcctcattccacgtcttggtccctggatctgtggattacgtgacatctgtccttcctctcct |
45303 |
T |
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| Q |
118 |
tctgcattagttactgcagtaattaccttggtcttatccataaca |
162 |
Q |
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| T |
45302 |
tctgcattagttactgcagtaatttccttggtcttatccataaca |
45258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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