View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13000_low_15 (Length: 328)
Name: NF13000_low_15
Description: NF13000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13000_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 45146112 - 45146416
Alignment:
| Q |
1 |
ttgttccctcaactctcatttcacaagtaacacaccacaaaggaagatatacaacattacaacgttaggtgttccgcgttgagtaaataaaattgttcaa |
100 |
Q |
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| T |
45146112 |
ttgttccctcaactctcaattcacaagtaacacaccacaaaggaagatatacaacattacaacgttaggtgttccgcgttgagtaaataaaattgttcaa |
45146211 |
T |
|
| Q |
101 |
tgtgctacttaagtcatagggttctctaatctaattgatagataaatcttttaggccggactcttctcatgtgttttagtcttgacaattgatgctttta |
200 |
Q |
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|||| || |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45146212 |
tgtgatatttaagttatagggttctctaatctaattaatagataaatcttttaggccggactcttctcatgtgttttagtcttgacaattgatgctttta |
45146311 |
T |
|
| Q |
201 |
ttaagagttaggtcacaaaaagagttattataaactgaattaagatgttccattgaatactgttatagatgcacaatactttatacaaggagttgctaat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
45146312 |
ttaagagttaggtcacaaaaagagttattataaactgaattaagatgttccattgaatactcttatagatgcacaatactttatataaggagttgctaat |
45146411 |
T |
|
| Q |
301 |
tagtc |
305 |
Q |
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||||| |
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| T |
45146412 |
tagtc |
45146416 |
T |
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