View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13000_low_2 (Length: 660)
Name: NF13000_low_2
Description: NF13000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13000_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 17 - 643
Target Start/End: Complemental strand, 24809540 - 24808910
Alignment:
| Q |
17 |
ataatttgagaaaaccacgtaatctatcaaatttgatcctagctaacatgtttgaatgatatacaacagatggaaacaaatgaaggaagataggatgtcc |
116 |
Q |
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| T |
24809540 |
ataatttgaaaaaaccacgtaatctatcaaatttgatcctagctaacatgtttgaatgatatacaacagatggaaacaaatgaaggaagataggatgtcc |
24809441 |
T |
|
| Q |
117 |
ttttttccctcagctcggttagtgaatggctttgaaatttgtcttacaaagagacatgataataatcaaagaaactgaaacatatgtcaccatgttcatc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24809440 |
ttttttccctcagctcggttagtgaatggctttgaaatttgtcttacaaagagacatgataataatcaaagaaactgaaacatatgtcaccatgttcatc |
24809341 |
T |
|
| Q |
217 |
tcaactannnnnnnagtcactgttgttttctctgactacatgtttttgctgagatactctctcagttgttgtccacaacaattatgtatgtgtttcagag |
316 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24809340 |
tcaactatttttttagtcactgttgttttctctgactacatgtttttgctgagatactctctcagttgttgtccacaacaattatgtatgtgtttcagag |
24809241 |
T |
|
| Q |
317 |
tttatattatgttttcatgtatacatataattacatgttcatttactcatgtaagggttttatacttgtattgtataatgtatagtatagtataatatac |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24809240 |
tttatattatgttttcatgtatacatataattacatgttcatttactcatgtaagggttttatacttgtattgtataatgtatagtatagtataatatac |
24809141 |
T |
|
| Q |
417 |
accagctaagtcttaaggtgnnnnnnnnnnnnnnnnnnnnnnnccacgataatccaatgtttattatttgtgtataaacaatttgttttcgctggactgt |
516 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||| || ||||||| |
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| T |
24809140 |
accagctaagtcttaaagtgtttatttttttcattcattttttccacgataatccaatgtttattatttgtgtaaaaacaatttgtttttgcaggactgt |
24809041 |
T |
|
| Q |
517 |
ctctcttttttctccttttatattagattcaccaacatgatacaaacctgtaattttg-ttttgttttgaaaaagcaaaaatatatgatatatt---aaa |
612 |
Q |
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||||||||| ||||||||||||||||||||| | |||||| |||||||| |||||||| |||| |||| |||||| ||||||||||||||||| ||| |
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| T |
24809040 |
ctctcttttctctccttttatattagattcatcgacatgacacaaacctataattttgttttttttttttaaaagccaaaatatatgatatattaaaaaa |
24808941 |
T |
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| Q |
613 |
aacattcaatcacgacacaagaagtgttaag |
643 |
Q |
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|| |||||||||||||||||||||||||||| |
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| T |
24808940 |
aaaattcaatcacgacacaagaagtgttaag |
24808910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 29946405 - 29946339
Alignment:
| Q |
36 |
taatctatcaaatttgatcctagctaacatgtttgaatgatatacaacagatggaaacaaatgaagg |
102 |
Q |
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|||| ||||||||||||||||| ||||||||||| ||||||||||| |||| ||||| ||||||||| |
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| T |
29946405 |
taatatatcaaatttgatcctacctaacatgtttaaatgatatacagcagacggaaataaatgaagg |
29946339 |
T |
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