View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13000_low_20 (Length: 307)
Name: NF13000_low_20
Description: NF13000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13000_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 16 - 291
Target Start/End: Complemental strand, 5176907 - 5176630
Alignment:
| Q |
16 |
actatactcttacaacatgatgagtaaaggtttagatttcatgttcctgtgaatgaacataattcagagtataaggacattgttatatgtaagaagggtt |
115 |
Q |
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| T |
5176907 |
actatactcttacaagatgatgagtaaaggtttagatttcatgttcctgtgaatgaacataattcagagtatagggatattgttagatgtaagaagggtt |
5176808 |
T |
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| Q |
116 |
caaactccgaattctatatttcttcactttaaagggtgaagtttctagtcgctagattatttgcggaaaaaag-aaaagattgaattttagacgtaagag |
214 |
Q |
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|||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||| |||||| |
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| T |
5176807 |
gaaactccgaattttatatttcttcattttaaagggtgaagtttttagtcgctagattatttgcagaaaaaagaaaaagattgaattttagacataagag |
5176708 |
T |
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| Q |
215 |
ataaccacatttaatgtgtgacgcacctcaaatatattacttcaaatgaaagaaatttgg-aaaaaatagtgttaata |
291 |
Q |
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||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||| |
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| T |
5176707 |
ataaccacatttagtgtgtgatgcacctcaaatatattacttcaaataaaagaaatatggaaaaaaatagtgttaata |
5176630 |
T |
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