View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13000_low_21 (Length: 305)
Name: NF13000_low_21
Description: NF13000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13000_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 11 - 287
Target Start/End: Original strand, 32072116 - 32072393
Alignment:
| Q |
11 |
gaagaatagtactt-aacatatcttaggcttggaattgatggtaacatcaaattttacacatattttctagatgttcaagatggtgtttggaaagtgaca |
109 |
Q |
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| T |
32072116 |
gaagaatagtactttaacatatcttaggcttggaattgatggtaacatcagattttacacatattttctagatgttcaagatggtgtttggaaagtgaca |
32072215 |
T |
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| Q |
110 |
tacactctctttgatagagattttgatgagagtgaatgtcaattgccaaagagatgtggaaaattttggttttgtgaggataatcaatgtgttggttgtc |
209 |
Q |
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| T |
32072216 |
tacactctctttgatagagattttgatgagagtgaatgtcaattgccaaagagatgtggaaaatttgggctttgtgaggataatcaatgtgttggttgtc |
32072315 |
T |
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| Q |
210 |
ctttggagaatggaatcttaagttggagcaataattgtagtgctaagcctgtaggagtatgcaaagcaagtgagtttc |
287 |
Q |
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| T |
32072316 |
ctttggagaatggaatcttaagttcgagcaataattgtagtgctaagcctgtagtagtatgcaaagcaagtgagtttc |
32072393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 22 - 287
Target Start/End: Original strand, 32064796 - 32065070
Alignment:
| Q |
22 |
cttaacatatcttaggcttggaattgatggtaacatcaaattttacacatattttctagatgttcaagatggtgtttggaaagtgacatacactctcttt |
121 |
Q |
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| T |
32064796 |
cttaacatatcttaggcttggaattgatggtaacattcaatttcacacttactttctagatgtacgcagtggtgtttggaaagtgacattcactctcttt |
32064895 |
T |
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| Q |
122 |
gat--aga----gattttgatgagagtgaatgtcaattgccaaagagatgtggaaaattttggttttgtgaggataatcaatgtgttggttgtcctttgg |
215 |
Q |
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| T |
32064896 |
gatgaagatgaagatctagatgagagtgagtgtcaattgccagagagatgtggggaatttgggctttgtgaggataatcaatgttttggttgtccattgg |
32064995 |
T |
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| Q |
216 |
agaatggaatcttaagttggagcaataattgtagtgctaagcct---gtaggagtatgcaaagcaagtgagtttc |
287 |
Q |
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| T |
32064996 |
agaatggaatatttggttggagtaataagtgtagccctaagcctttaggaggagtatgcaaagcaagtgaatttc |
32065070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 22 - 287
Target Start/End: Original strand, 32031661 - 32031930
Alignment:
| Q |
22 |
cttaacatatcttaggcttggaattgatggtaacatcaaattttacacatattttctagatgttcaagatggtgtttggaaagtgacatacactctcttt |
121 |
Q |
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| T |
32031661 |
cttaacatatcttaggcttggaattgatggtaatattaaatttcacacctacttccttgatgtgcgtagtggtgtttggaaagtgacatacactctcttt |
32031760 |
T |
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| Q |
122 |
gatagagattttgatgagagtgaatgtc-aattgccaaagagatgtggaaaattttggttttgtgaggataatcaatgtgttggttgtcctttggagaat |
220 |
Q |
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| T |
32031761 |
gatgaagatgaagatgagggtgagtgcccaattgcctgagagatgtgggaaatttgggctttgtgaggataatcaatgtgttggttgtccattggagaat |
32031860 |
T |
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| Q |
221 |
ggaatcttaagttggagcaataattgtagtgctaagcct---gtaggagtatgcaaagcaagtgagtttc |
287 |
Q |
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| T |
32031861 |
ggaatatttggttggagtaataaatgtaatgctaagcctttaggaggagtatgcaaagcaagtgaatttc |
32031930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 32078654 - 32078706
Alignment:
| Q |
23 |
ttaacatatcttaggcttggaattgatggtaacatcaaattttacacatattt |
75 |
Q |
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| T |
32078654 |
ttaacatatccaaggcttggaattgatggtaacattaaaattcacacttattt |
32078706 |
T |
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