View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13000_low_22 (Length: 303)

Name: NF13000_low_22
Description: NF13000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13000_low_22
NF13000_low_22
[»] chr4 (2 HSPs)
chr4 (1-228)||(26573478-26573705)
chr4 (227-292)||(26574123-26574188)
[»] chr2 (19 HSPs)
chr2 (227-295)||(10334888-10334956)
chr2 (227-295)||(10370990-10371058)
chr2 (227-292)||(8574418-8574483)
chr2 (225-288)||(10340609-10340672)
chr2 (22-162)||(10370439-10370585)
chr2 (229-292)||(9287760-9287823)
chr2 (1-227)||(10339975-10340214)
chr2 (1-137)||(10350759-10350901)
chr2 (227-292)||(10346863-10346928)
chr2 (78-162)||(10346306-10346390)
chr2 (227-292)||(11425340-11425405)
chr2 (229-292)||(9285144-9285207)
chr2 (227-288)||(10351330-10351391)
chr2 (227-281)||(9318714-9318768)
chr2 (227-291)||(9291125-9291191)
chr2 (227-277)||(9069022-9069072)
chr2 (235-281)||(9315244-9315290)
chr2 (235-281)||(9326586-9326632)
chr2 (227-292)||(9273220-9273285)
[»] chr3 (1 HSPs)
chr3 (227-295)||(37461562-37461630)
[»] chr8 (1 HSPs)
chr8 (240-292)||(41968355-41968408)
[»] scaffold0667 (1 HSPs)
scaffold0667 (235-281)||(1726-1772)


Alignment Details
Target: chr4 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 26573478 - 26573705
Alignment:
Q  1 aatgtttatcacagtattatctttcaacttgattttccaattctcaataaaaactacaaaatgaaattnnnnnnnnn-gttccaaaatcatgcaacacac 99  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||    
T  26573478 aatgcttatcacagtat-atctttcaacttgattttccaattctcaataaaaactacaaaatgaaattaaaaaaaaatgttccaaaatcatgcaacacac 26573576  T
Q  100 atttccaaattcctaaaactataaaagtatcatacttatatatggctcaaaatgattttaaaatnnnnnnncactataattgcatgatcatttcaaaaca 199  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||       ||||||||||| | |||||||||||||||    
T  26573577 atttccaaattcctaaaactataacagtatcatacttacatatggctaaaaatgattttaaaataaaaaaacactataattgtacgatcatttcaaaaca 26573676  T
Q  200 ggtatctcatttaaaacagtatggaatac 228  Q
    |||||||||||||||||||||||||||||    
T  26573677 ggtatctcatttaaaacagtatggaatac 26573705  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 227 - 292
Target Start/End: Original strand, 26574123 - 26574188
Alignment:
Q  227 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacaggt 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26574123 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacaggt 26574188  T

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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 227 - 295
Target Start/End: Original strand, 10334888 - 10334956
Alignment:
Q  227 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacaggttct 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10334888 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacacgttct 10334956  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 227 - 295
Target Start/End: Original strand, 10370990 - 10371058
Alignment:
Q  227 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacaggttct 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10370990 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacacgttct 10371058  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 227 - 292
Target Start/End: Complemental strand, 8574483 - 8574418
Alignment:
Q  227 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacaggt 292  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  8574483 accaaggtgactaattccatcacaagaaacaacttgagcatcctgtttcagctgcacatcacaggt 8574418  T

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Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 225 - 288
Target Start/End: Original strand, 10340609 - 10340672
Alignment:
Q  225 ataccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcac 288  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10340609 ataccgaggtgactaattccatcataagaaacaactggagcatcctgtttcagctgcacttcac 10340672  T

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Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 10370439 - 10370585
Alignment:
Q  22 tttcaacttgattttccaattctcaataaaaactacaaaatgaaattnnnnnnnnn------gttccaaaatcatgcaacacacatttccaaattcctaa 115  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||               |||||||||||||| ||||||||||| |||||||||||    
T  10370439 tttcaacttgattttcctattctcaataaaaactacaaaatgaaattaaaaaaaaaaataatgttccaaaatcatgtaacacacatttacaaattcctaa 10370538  T
Q  116 aactataaaagtatcatacttatatatggctcaaaatgattttaaaa 162  Q
    ||||| || |||||||| ||||  | ||||| |||||||||| ||||    
T  10370539 aactagaacagtatcattcttaggtttggctaaaaatgatttaaaaa 10370585  T

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Target: chr2; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 229 - 292
Target Start/End: Original strand, 9287760 - 9287823
Alignment:
Q  229 caaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacaggt 292  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  9287760 caaggtgactaactccatcacaagaaacaacttgagcatcctgtttcagctgcacatcacaggt 9287823  T

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Target: chr2; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 10339975 - 10340214
Alignment:
Q  1 aatgtttatcacagtattatctttcaacttgattttccaattctcaataaaaactacaaaatgaaatt---------nnnnnnnnngttccaaaatcatg 91  Q
    |||| |||||||||||||||||||||||||||| |||| ||||  |||||||||||||||||||||||                  ||| ||||||||||    
T  10339975 aatgcttatcacagtattatctttcaacttgatcttcctattcaaaataaaaactacaaaatgaaattaaaaaaaaaaaaaaaaatgtttcaaaatcatg 10340074  T
Q  92 caacacacatttccaaattcctaaaactataaaagtatcatacttatatatggctcaaaatgattttaaaatnnnnnnncactataattgcatgatcatt 191  Q
    ||  |||||||||||||||||||||||||||| |||||||| |||| || | ||| |||||||||| ||||        || |||||| | |||||| ||    
T  10340075 ca--acacatttccaaattcctaaaactataacagtatcattcttacattttgctaaaaatgatttaaaaaagaaaacacaatataatcgtatgatcctt 10340172  T
Q  192 tcaaaacagg------tatctcatttaaaacagtatggaata 227  Q
    ||||||||||      |||||||||||||| |||||||||||    
T  10340173 tcaaaacaggtttcgctatctcatttaaaatagtatggaata 10340214  T

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Target: chr2; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 10350759 - 10350901
Alignment:
Q  1 aatgtttatcacagtattatctttcaacttgattttccaattct-caataaaaactacaaaatgaaatt----nnnnnnnnngttccaaaatcatgcaac 95  Q
    |||| ||||||||||||| |||||||||||||||||||||||||  || ||||||||||||||||||||             ||||||||||||||||||    
T  10350759 aatgcttatcacagtattctctttcaacttgattttccaattctaaaaaaaaaactacaaaatgaaattaaaaaaaaaaaaagttccaaaatcatgcaac 10350858  T
Q  96 acacatttccaaattcctaaaacta-taaaagtatcatactta 137  Q
    ||||||||| |||||| |||||||| ||| |||||||| ||||    
T  10350859 acacatttctaaattcttaaaactattaacagtatcattctta 10350901  T

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Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 227 - 292
Target Start/End: Original strand, 10346863 - 10346928
Alignment:
Q  227 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacaggt 292  Q
    ||||||||||||||||||||||||||||||||| || || || |||||||||||||||||||||||    
T  10346863 accaaggtgactaattccatcacaagaaacaaccggtgcttcatgtttcagctgcacttcacaggt 10346928  T

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Target: chr2; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 10346306 - 10346390
Alignment:
Q  78 gttccaaaatcatgcaacacacatttccaaattcctaaaactataaaagtatcatacttatatatggctcaaaatgattttaaaa 162  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||| || ||| | |||||| ||||||||    
T  10346306 gttccaaaatcatgcagcacacatttccaaattcataaaactataacagtatcattcttacatttgggtaaaaatgcttttaaaa 10346390  T

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Target: chr2; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 227 - 292
Target Start/End: Complemental strand, 11425405 - 11425340
Alignment:
Q  227 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacaggt 292  Q
    |||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||| ||||||||    
T  11425405 accaaggtgattaattccttcacaagaaacaactcgagtatcctgtttcagctgcacatcacaggt 11425340  T

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Target: chr2; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 229 - 292
Target Start/End: Complemental strand, 9285207 - 9285144
Alignment:
Q  229 caaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacaggt 292  Q
    |||| ||||||||||||||||||||||| ||| ||||||| |||||||||||||| ||||||||    
T  9285207 caagatgactaattccatcacaagaaactacttgagcatcatgtttcagctgcacatcacaggt 9285144  T

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Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 227 - 288
Target Start/End: Original strand, 10351330 - 10351391
Alignment:
Q  227 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcac 288  Q
    ||||||||||  ||||||||||||||||||||| | |||||||| |||||||||||||||||    
T  10351330 accaaggtgagcaattccatcacaagaaacaacagaagcatcctatttcagctgcacttcac 10351391  T

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Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 9318714 - 9318768
Alignment:
Q  227 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgc 281  Q
    ||||||||  |||||||||||||||||||||||| ||| ||||||||||||||||    
T  9318714 accaaggtttctaattccatcacaagaaacaacttgagtatcctgtttcagctgc 9318768  T

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Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 291
Target Start/End: Original strand, 9291125 - 9291191
Alignment:
Q  227 accaaggtgactaattccatcacaagaaacaac--tggagcatcctgtttcagctgcacttcacagg 291  Q
    |||||||| |||||||||||||||| |||||||  | ||| |||||||||||||||||| |||||||    
T  9291125 accaaggtaactaattccatcacaacaaacaacttttgagaatcctgtttcagctgcacatcacagg 9291191  T

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Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 277
Target Start/End: Complemental strand, 9069072 - 9069022
Alignment:
Q  227 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcag 277  Q
    |||||||||||||||| ||||||||||| ||||| ||||||| ||||||||    
T  9069072 accaaggtgactaattacatcacaagaagcaacttgagcatcatgtttcag 9069022  T

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Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 9315244 - 9315290
Alignment:
Q  235 gactaattccatcacaagaaacaactggagcatcctgtttcagctgc 281  Q
    |||||||||||||||||||||||| | ||||||| ||||||||||||    
T  9315244 gactaattccatcacaagaaacaagttgagcatcatgtttcagctgc 9315290  T

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Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 9326586 - 9326632
Alignment:
Q  235 gactaattccatcacaagaaacaactggagcatcctgtttcagctgc 281  Q
    |||||||||||||||||||||||||| ||| ||||||| ||||||||    
T  9326586 gactaattccatcacaagaaacaacttgagtatcctgtatcagctgc 9326632  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 292
Target Start/End: Original strand, 9273220 - 9273285
Alignment:
Q  227 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacaggt 292  Q
    ||||||| |||||||||||| ||||||| ||||| ||||||| ||||  |||||||  ||||||||    
T  9273220 accaaggagactaattccataacaagaagcaacttgagcatcgtgttaaagctgcatatcacaggt 9273285  T

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Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 227 - 295
Target Start/End: Original strand, 37461562 - 37461630
Alignment:
Q  227 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacaggttct 295  Q
    ||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||| | |||||||||    
T  37461562 accaaggagactaattccatcacaagaaacaacttgagcaccctgtttcagctgcacattacaggttct 37461630  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 41968408 - 41968355
Alignment:
Q  240 attccatcacaagaaacaactggagcatcct-gtttcagctgcacttcacaggt 292  Q
    ||||||||| ||||||||||| ||||||||| ||||||||||||| ||||||||    
T  41968408 attccatcagaagaaacaacttgagcatcctggtttcagctgcacatcacaggt 41968355  T

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Target: scaffold0667 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 1726 - 1772
Alignment:
Q  235 gactaattccatcacaagaaacaactggagcatcctgtttcagctgc 281  Q
    |||||||||||| ||||||||||||| ||| || |||||||||||||    
T  1726 gactaattccattacaagaaacaacttgagaattctgtttcagctgc 1772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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