View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13000_low_26 (Length: 286)
Name: NF13000_low_26
Description: NF13000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13000_low_26 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 62 - 221
Target Start/End: Complemental strand, 28703585 - 28703429
Alignment:
| Q |
62 |
attaatttagacattaaactcaaataattgtttacataactannnnnnnnaagtaagcaacttnnnnnnnnnncattcctaaacctagaatcaattgtga |
161 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28703585 |
attactttagacattaaactcaaataattgtttacataactattttttttaagtaagcaacttaaaaaaa---cattcctaaacctagaatcaattgtga |
28703489 |
T |
|
| Q |
162 |
tcgaactttgaatgatccttgcaaacgtctgaaaaagattaaataatagtggattgagat |
221 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28703488 |
tcgaattttgaatgatccttgcaaacgtctgaaaaagattaaataatagtggattgagat |
28703429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 28703676 - 28703620
Alignment:
| Q |
9 |
gaagaatatagaacgatacatggaaaactttctttgaaatgcttaaaaacttgatta |
65 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||| |||||||||||| |
|
|
| T |
28703676 |
gaagaatatagaacgatacatggaaaactggctttgagatgcttgaaaacttgatta |
28703620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University