View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13000_low_27 (Length: 275)
Name: NF13000_low_27
Description: NF13000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13000_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 94; Significance: 6e-46; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 47639369 - 47639244
Alignment:
| Q |
1 |
ttccattcgcatcggtcacttatgccgcactatactgatacttgataatatccctattaagatatggggaatgttaacgaagaaccattgatagtaagct |
100 |
Q |
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| T |
47639369 |
ttccattcgcatcggtaacttatgtcgcactatattgatacttgataatttccctattaagatatgggggatgttaacgaagaaccattaatagtaaact |
47639270 |
T |
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| Q |
101 |
tttatgaaaaattgtgtaatcaatac |
126 |
Q |
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| T |
47639269 |
tttataaaaaattgtgtaatcaatac |
47639244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 176 - 258
Target Start/End: Complemental strand, 47639194 - 47639113
Alignment:
| Q |
176 |
ggatccttaaaatgtgtatattcattttgcacgcgtgggaaagttgtaggccatgataatctttgtttcattctaatgttcaa |
258 |
Q |
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| T |
47639194 |
ggatccttaaa-tgtgtatattcattttgcacgcgtggggaagttgtaggccatgataatctttggttcattctaatgttcaa |
47639113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 42259000 - 42258954
Alignment:
| Q |
80 |
aagaaccattgatagtaagcttttatgaaaaattgtgtaatcaatac |
126 |
Q |
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| T |
42259000 |
aagaaccattaatgataagtttttatgaaaaattgtgtaatcaatac |
42258954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 124
Target Start/End: Original strand, 48811379 - 48811412
Alignment:
| Q |
91 |
atagtaagcttttatgaaaaattgtgtaatcaat |
124 |
Q |
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| T |
48811379 |
atagtaagtttttatgaaaaattgtgtaatcaat |
48811412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 4806503 - 4806547
Alignment:
| Q |
80 |
aagaaccattgatagtaagcttttatgaaaaattgtgtaatcaat |
124 |
Q |
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| T |
4806503 |
aagaaccattaatagtaagtttttatgaaaatatgtgtaatcaat |
4806547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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