View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13000_low_28 (Length: 270)
Name: NF13000_low_28
Description: NF13000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13000_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 32 - 261
Target Start/End: Original strand, 11859671 - 11859900
Alignment:
| Q |
32 |
gtggtgatagtggtgacaactggattccagaagcattggaaatgcttaagtttatctattacgacaatcttcccacttatcagaagttatgctttgcata |
131 |
Q |
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| T |
11859671 |
gtggtggtcgtggtgacaactggattccgaaagcattagaaacgcttaagtttatctattacgacaaccttcccacttatcagaagttatgcttcgcata |
11859770 |
T |
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| Q |
132 |
ttgttcattgtttccagaagattatttgattgatgcagagagattgattcaactctggactgctgaagggtttcttatcaatccagaacaacaatttggt |
231 |
Q |
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| T |
11859771 |
ttgttcattgtttccagaagattatttgattgatgcagagagattgattcaactctggacggctgaagggtttcttatcaatccagaacaacaatttggt |
11859870 |
T |
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| Q |
232 |
caagcttgtttcgaagacattgttcctttg |
261 |
Q |
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| T |
11859871 |
caagcttgtttcaaagactttgttcctttg |
11859900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 25 - 261
Target Start/End: Original strand, 11827529 - 11827765
Alignment:
| Q |
25 |
aagcaaagtggtgatagtggtgacaactggattccagaagcattggaaatgcttaagtttatctattacgacaatcttcccacttatcagaagttatgct |
124 |
Q |
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| T |
11827529 |
aagcatagtggtgttggtggtgaagaatggattcgggaagcactagaaaaggtgaagcttatctattacgacgatcttcccacttatcagaaattatgct |
11827628 |
T |
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| Q |
125 |
ttgcatattgttcattgtttccagaagattatttgattgatgcagagagattgattcaactctggactgctgaagggtttcttatcaatccagaacaaca |
224 |
Q |
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| T |
11827629 |
ttgcatattgttcattgtttccagaagattatttgattgatgcagagagattgattcaactctggactggtgaagggtttcttatcaatccagaacaaca |
11827728 |
T |
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| Q |
225 |
atttggtcaagcttgtttcgaagacattgttcctttg |
261 |
Q |
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| T |
11827729 |
atttggtcatgcttgtttcgaagactttgttcctttg |
11827765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 84 - 206
Target Start/End: Original strand, 12038482 - 12038604
Alignment:
| Q |
84 |
tatctattacgacaatcttcccacttatcagaagttatgctttgcatattgttcattgtttccagaagattatttgattgatgcagagagattgattcaa |
183 |
Q |
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| T |
12038482 |
tatctattacgaagatcttcccacgtatcagaagttgtgctttgcatattgttcattgtttccagaagattatttaattgatgccgagagattaattcaa |
12038581 |
T |
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| Q |
184 |
ctctggactgctgaagggtttct |
206 |
Q |
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| T |
12038582 |
ctttggacggctgaaggatttct |
12038604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 115 - 257
Target Start/End: Complemental strand, 11902770 - 11902628
Alignment:
| Q |
115 |
aagttatgctttgcatattgttcattgtttccagaagattatttgattgatgcagagagattgattcaactctggactgctgaagggtttcttatcaatc |
214 |
Q |
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| T |
11902770 |
aagttatgttttgcatattgttcattgtttccaagagattatttgattgatgctgagagattaattgaactctggactgctgaaggatttctcaccattc |
11902671 |
T |
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| Q |
215 |
cagaacaacaatttggtcaagcttgtttcgaagacattgttcc |
257 |
Q |
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| T |
11902670 |
cacaacaacaattttgtcgaccttgtttcaatgactttgttcc |
11902628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 200
Target Start/End: Original strand, 11731387 - 11731508
Alignment:
| Q |
79 |
aagtttatctattacgacaatcttcccacttatcagaagttatgctttgcatattgttcattgtttccagaagattatttgattgatgcagagagattga |
178 |
Q |
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| T |
11731387 |
aagtttagatattacgaggatcttcccacatgttataaattgtgctttgcattttgttcattgtttccagaacatcatttgattgatgccgagagattaa |
11731486 |
T |
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| Q |
179 |
ttcaactctggactgctgaagg |
200 |
Q |
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| T |
11731487 |
ttcaactttggtttgctgaagg |
11731508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 12038623 - 12038674
Alignment:
| Q |
210 |
caatccagaacaacaatttggtcaagcttgtttcgaagacattgttcctttg |
261 |
Q |
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| T |
12038623 |
caatccagaacaacaatttggtcgagcttgtttcaacgactttgttcctttg |
12038674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 205
Target Start/End: Complemental strand, 11975068 - 11974974
Alignment:
| Q |
111 |
tcagaagttatgctttgcatattgttcattgtttccagaagattatttgattgatgcagagagattgattcaactctggactgctgaagggtttc |
205 |
Q |
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| T |
11975068 |
tcagaagttttgttttgaattttgttcattgtttcctcaagatcatttgattgatgtcgagagattaattcatctcttgacagcagaaggatttc |
11974974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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