View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13000_low_3 (Length: 533)

Name: NF13000_low_3
Description: NF13000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13000_low_3
NF13000_low_3
[»] chr1 (10 HSPs)
chr1 (1-514)||(24352740-24353247)
chr1 (1-514)||(24340375-24340882)
chr1 (46-484)||(24367144-24367591)
chr1 (53-417)||(24310265-24310635)
chr1 (50-412)||(24322835-24323192)
chr1 (51-422)||(24415834-24416199)
chr1 (435-485)||(24369476-24369526)
chr1 (286-409)||(24369581-24369704)
chr1 (439-484)||(24310168-24310213)
chr1 (49-112)||(24369801-24369864)
[»] chr4 (45 HSPs)
chr4 (54-423)||(49040795-49041157)
chr4 (50-163)||(48852993-48853103)
chr4 (50-118)||(7878737-7878805)
chr4 (50-111)||(7790441-7790502)
chr4 (50-111)||(7908663-7908724)
chr4 (54-167)||(48863573-48863683)
chr4 (51-174)||(49038518-49038638)
chr4 (50-106)||(7771761-7771817)
chr4 (50-118)||(7773464-7773532)
chr4 (50-118)||(45371713-45371781)
chr4 (53-105)||(50666682-50666734)
chr4 (437-484)||(48147754-48147801)
chr4 (54-112)||(48156072-48156130)
chr4 (50-112)||(48864395-48864457)
chr4 (50-111)||(7813838-7813899)
chr4 (56-112)||(48147358-48147414)
chr4 (437-484)||(48735419-48735466)
chr4 (53-112)||(49043810-49043869)
chr4 (50-111)||(7786825-7786886)
chr4 (50-111)||(7800998-7801059)
chr4 (435-484)||(45372107-45372156)
chr4 (431-488)||(48902925-48902982)
chr4 (435-484)||(49041199-49041248)
chr4 (54-106)||(7237386-7237438)
chr4 (437-481)||(7908325-7908369)
chr4 (440-483)||(7237763-7237806)
chr4 (440-483)||(7771396-7771439)
chr4 (440-483)||(7790081-7790124)
chr4 (437-484)||(45384905-45384952)
chr4 (437-484)||(50250818-50250865)
chr4 (437-483)||(7877727-7877773)
chr4 (50-112)||(45384531-45384593)
chr4 (62-116)||(47208233-47208287)
chr4 (437-483)||(48705396-48705442)
chr4 (61-111)||(48903316-48903366)
chr4 (50-111)||(7766003-7766064)
chr4 (53-102)||(37826632-37826681)
chr4 (435-484)||(48170597-48170646)
chr4 (439-484)||(48852663-48852708)
chr4 (439-484)||(48870539-48870584)
chr4 (439-484)||(48875843-48875888)
chr4 (439-484)||(48886225-48886270)
chr4 (439-484)||(48898701-48898746)
chr4 (63-111)||(48861649-48861697)
chr4 (440-484)||(49048613-49048657)
[»] chr5 (9 HSPs)
chr5 (38-173)||(42561960-42562092)
chr5 (437-484)||(29696203-29696250)
chr5 (53-118)||(9120117-9120182)
chr5 (206-323)||(42562119-42562236)
chr5 (432-484)||(179031-179083)
chr5 (68-118)||(179412-179462)
chr5 (379-414)||(29712421-29712456)
chr5 (438-484)||(29712504-29712550)
chr5 (127-167)||(29712160-29712200)
[»] chr3 (7 HSPs)
chr3 (54-175)||(11015134-11015252)
chr3 (54-175)||(11005571-11005689)
chr3 (54-111)||(11024146-11024203)
chr3 (435-484)||(11005988-11006037)
chr3 (435-484)||(11024563-11024612)
chr3 (439-488)||(47451946-47451995)
chr3 (435-484)||(11015551-11015600)
[»] chr6 (4 HSPs)
chr6 (56-112)||(21016181-21016237)
chr6 (65-105)||(14197337-14197377)
chr6 (203-255)||(21979420-21979472)
chr6 (440-484)||(21979678-21979722)
[»] chr8 (5 HSPs)
chr8 (437-484)||(4031938-4031985)
chr8 (49-111)||(15349244-15349306)
chr8 (63-112)||(4031578-4031627)
chr8 (439-484)||(12200304-12200349)
chr8 (439-484)||(12444732-12444777)
[»] chr7 (1 HSPs)
chr7 (50-112)||(48884184-48884246)


Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 514
Target Start/End: Complemental strand, 24353247 - 24352740
Alignment:
Q  1 ttgttgtacaacatacaagggacacattatgaatggtatcataagtagtaagaacaagagttttagtccaagatgactgcactttgtattctttcattac 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24353247 ttgttgtacaacatacaagggaaacattatgaatggtatcataagtagtaagaacaagagttttagtccaagatgactgcactttatattctttcattac 24353148  T
Q  101 ccatatatcaaccgtatcctcatccaccataacccatagacttagaaatcctctaaatacccataaaccacaatccgtataacgatggtcaacatcaaga 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||| ||||       
T  24353147 ccagatatcaaccgtatcctcatccaccataacccatagacttagaaatcctctacatacccataaaccacaaaccgtataaccatggtcaaaatca--- 24353051  T
Q  201 tcatctgggagaggaatctctacaagtttcctttcgactaaatcaaaggcaacaacaagatagtcacgtgtatcataactgaaagccaaccagtgaatag 300  Q
       |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||    
T  24353050 ---tctgggagaggaatctctacaagtttcctttcgactaattcaaaggcaacaacaagatattcatgtgtatcataattgaaagccaaccagtgaatag 24352954  T
Q  301 ctccgttgaagaccgactctactaagggataaacaaaggaagaggacttactacaaaaaggcaaatgggtagggctcacaatttcgttccacgcattagc 400  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24352953 ctccgttgaagaccgactctactaagggataaacaaagggagaggacttactacaaaaaggcaaatgggtagggctcacaatttcgttccacgcattagc 24352854  T
Q  401 tctcaatgagaaaatccccaagtaaacatatgaaactgaaaccaccaagtaatcatctgttgactcgtcatacccaaaaccataaaaaactaaatgtgaa 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||| ||||    
T  24352853 tctcaatgagaaaatccccaagtaaacatatgaaactgaaaccaccaagtaatcatatgttgattcgtcatacccaaaaccataaaaaattaaatttgaa 24352754  T
Q  501 acactaggagggaa 514  Q
    ||| ||||||||||    
T  24352753 acattaggagggaa 24352740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 514
Target Start/End: Complemental strand, 24340882 - 24340375
Alignment:
Q  1 ttgttgtacaacatacaagggacacattatgaatggtatcataagtagtaagaacaagagttttagtccaagatgactgcactttgtattctttcattac 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24340882 ttgttgtacaacatacaagggaaacattatgaatggtatcataagtagtaagaacaagagttttagtccaagatgactgcactttatattctttcattac 24340783  T
Q  101 ccatatatcaaccgtatcctcatccaccataacccatagacttagaaatcctctaaatacccataaaccacaatccgtataacgatggtcaacatcaaga 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||| ||||       
T  24340782 ccagatatcaaccgtatcctcatccaccataacccatagacttagaaatcctctacatacccataaaccacaaaccgtataaccatggtcaaaatca--- 24340686  T
Q  201 tcatctgggagaggaatctctacaagtttcctttcgactaaatcaaaggcaacaacaagatagtcacgtgtatcataactgaaagccaaccagtgaatag 300  Q
       |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||    
T  24340685 ---tctgggagaggaatctctacaagtttcctttcgactaattcaaaggcaacaacaagatattcatgtgtatcataattgaaagccaaccagtgaatag 24340589  T
Q  301 ctccgttgaagaccgactctactaagggataaacaaaggaagaggacttactacaaaaaggcaaatgggtagggctcacaatttcgttccacgcattagc 400  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24340588 ctccgttgaagaccgactctactaagggataaacaaagggagaggacttactacaaaaaggcaaatgggtagggctcacaatttcgttccacgcattagc 24340489  T
Q  401 tctcaatgagaaaatccccaagtaaacatatgaaactgaaaccaccaagtaatcatctgttgactcgtcatacccaaaaccataaaaaactaaatgtgaa 500  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||| ||||    
T  24340488 tctcaatgagaaaatccccaagtaaacatattaaactgaaaccaccaagtaatcatatgttgattcgtcatacccaaaaccataaaaaattaaatttgaa 24340389  T
Q  501 acactaggagggaa 514  Q
    ||| ||||||||||    
T  24340388 acattaggagggaa 24340375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 46 - 484
Target Start/End: Complemental strand, 24367591 - 24367144
Alignment:
Q  46 tagtaagaacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaaccgtatcctcatccaccataacccatagacttag 145  Q
    |||| ||||||||||||||||||||||| || |||||||||||||||| |||||||||||||| ||  ||||| || ||| | | |||||||||||| ||    
T  24367591 tagttagaacaagagttttagtccaagacgaatgcactttgtattcttccattacccatatataaagtgtatc-tc-tcctcaa-aacccatagactgag 24367495  T
Q  146 aaatcctctaaatacccataaaccacaatccgtataacgatggtcaacatcaagatcatctgggagaggaatctctacaagtttcctttcgactaaatca 245  Q
    ||||||||||||||||||||||||    || | | ||  ||  |   ||   | |||| ||||||||||||| || | |||||||||||| | ||||  |    
T  24367494 aaatcctctaaatacccataaaccctggtctgaaaaatcatcatagtcaattatatcaactgggagaggaatatcgagaagtttcctttccattaaaaga 24367395  T
Q  246 aaggcaacaacaagatagtcacgtgtatcataactgaaagccaaccagtgaatagctccgttgaagaccgactctactaagggataaacaaaggaagagg 345  Q
    |||||||||| || || | ||||| |||||||||  |||| ||||||||||||||| || |  ||||  | |||||||| ||||||||||| ||||||||    
T  24367394 aaggcaacaataacattgacacgtatatcataacgaaaagtcaaccagtgaatagccccatgaaagagtgtctctactacgggataaacaatggaagagg 24367295  T
Q  346 a------------cttactacaaaaaggcaaatgggtagggctcacaatttcgttccacgcattagctctcaatgagaaaatccccaagtaaacatatga 433  Q
    |            || ||||||||||| |||||||||||  | |||| |||| ||||||||||||||||||||||||||||||||||||||| |||| ||    
T  24367294 aagagggagaaacctcactacaaaaagccaaatgggtagtacccacagtttcattccacgcattagctctcaatgagaaaatccccaagtaatcatagga 24367195  T
Q  434 aactgaaaccaccaagtaatcatctgttgactcgtcatacccaaaaccata 484  Q
     |  |||||||||||||||||||||||||||| ||||||||||||||||||    
T  24367194 taacgaaaccaccaagtaatcatctgttgacttgtcatacccaaaaccata 24367144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 53 - 417
Target Start/End: Complemental strand, 24310635 - 24310265
Alignment:
Q  53 aacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaaccgtatcctcatccaccataacccatagacttagaaatcct 152  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||  ||||||| |||  ||||||||||||||| |||||||||    
T  24310635 aacaagagttttactccaagaagactgcactttgtattctttcatcacccatatatcaactttatcctcgtccctcataacccatagactgagaaatcct 24310536  T
Q  153 ctaaatacccataaaccacaatccgtataacgatggtcaa------catcaagatcatctgggagaggaatctctacaagtttcctttcgactaaatcaa 246  Q
    |||||||||||||||| |||||| ||  ||| ||  ||||      ||||| ||||||||||||||||||| |||| |||| ||||||| | ||||| ||    
T  24310535 ctaaatacccataaactacaatctgtcgaaccatattcaatatcatcatcatgatcatctgggagaggaatttctagaagtatcctttcaattaaatgaa 24310436  T
Q  247 aggcaacaacaagatagtcacgtgtatcataactgaaagccaaccagtgaatagctccgttgaagaccgactctactaagggataaacaaaggaagagga 346  Q
    ||| ||||| || ||| || | |  ||||| ||  | |||||||||||||||||| || |||||||| |||||||| |  | |||| |||| | |||       
T  24310435 aggaaacaataacatactcgcatacatcatgacgaatagccaaccagtgaatagccccattgaagacggactctaccacagaataagcaaaaggagaaag 24310336  T
Q  347 cttactacaaaaaggcaaatgggtagggctcacaatttcgttccacgcattagctctcaatgagaaaatcc 417  Q
    || |||| ||||||| ||||| | ||| |||||||||||||| ||| |||||||||||| ||| |||||||    
T  24310335 ctcactataaaaaggtaaatgtgcaggactcacaatttcgttgcacacattagctctcattgaaaaaatcc 24310265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 50 - 412
Target Start/End: Complemental strand, 24323192 - 24322835
Alignment:
Q  50 aagaacaagagttttagtccaagatgactgcactttgtattctttcattaccca----tatatcaaccgtatcctcatccaccataacccatagacttag 145  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |||||    |||||||||  || ||   ||| ||| ||||||||||||  |    
T  24323192 aagaacaagagttttagtcgaagatgactgcactttgtattctttcatcacccacccatatatcaactttacccaagtcctccaaaacccatagactggg 24323093  T
Q  146 aaatcctctaaatacccataaaccacaatccgtataacgatggtcaacatcaagatcatctgggagaggaatctctacaagtttcctttcgactaaatca 245  Q
    ||||||||||||||||||||||||| ||||  |    |||     |||||||| ||||||| ||| |||||||||||||| ||| ||||| | || ||||    
T  24323092 aaatcctctaaatacccataaaccataatcttt----cga-----aacatcaatatcatctaggaaaggaatctctacaaattttctttccattagatca 24323002  T
Q  246 aaggcaacaacaagatagtcacgtgtatcataactgaaagccaaccagtgaatagctccgttgaagaccgactctactaagggataaacaaaggaagagg 345  Q
    |||||||||  |||||| ||| ||| ||||  ||| |||||||||||||||||||| |||||||||||||||||||| |  | ||||   |||| |||      
T  24323001 aaggcaacagtaagatactcatgtgcatcaggacttaaagccaaccagtgaatagccccgttgaagaccgactctaccacagaataagtgaagggaga-a 24322903  T
Q  346 acttactac-aaaaaggcaaatgggtagggctcacaatttcgttccacgcattagctctcaatgagaa 412  Q
    | ||||||| ||||||||||||| ||||| | |||||||||||||||||||||||||||||| |||||    
T  24322902 agttactacaaaaaaggcaaatgtgtaggacccacaatttcgttccacgcattagctctcaaagagaa 24322835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 51 - 422
Target Start/End: Complemental strand, 24416199 - 24415834
Alignment:
Q  51 agaacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaaccgtatcctcatccaccataacccatagacttagaaatc 150  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||  |||||| |  |  || |||||||||||| |||||||    
T  24416199 agaacaagagttttagtccaagatgactgccctttgtattctttcatcacccatatatcaactctatccttaaacctcaaaacccatagactgagaaatc 24416100  T
Q  151 ctctaaatacccataaaccacaatccgtataacgatggtcaacatcaagatcatctgggagaggaatctctacaagtttcctttcgactaaatcaaaggc 250  Q
    |||||||||||||||||| | |||| ||| | |       ||  |||| ||||  ||||||||||||||||| ||||||||||||   ||||| ||||||    
T  24416099 ctctaaatacccataaactataatctgtagacc------aaaattcaatatcacttgggagaggaatctctagaagtttcctttccgttaaatgaaaggc 24416006  T
Q  251 aacaacaagatagtcacgtgtatcataactgaaagccaaccagtgaatagctccgttgaagaccgactctactaagggataaacaaaggaagaggac-tt 349  Q
      ||||||   ||  |  | | |||| || |||||| ||||| |||||||| || ||||||||||||||||| |  |||||| || |   |||  ||       
T  24416005 tgcaacaa---agaaatctatctcatgacggaaagctaaccaatgaatagccccattgaagaccgactctaccacaggataatcagaaccagaacacggg 24415909  T
Q  350 actaca--aaaaggcaaatgggtagggctcacaatttcgttccacgcattagctctcaatgagaaaatccccaag 422  Q
    ||  ||  | |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||    
T  24415908 acctcaatacaaggcaaatgggtaggactcacaatttcgttccacacattagctctcaatgagaaaatcctcaag 24415834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 435 - 485
Target Start/End: Complemental strand, 24369526 - 24369476
Alignment:
Q  435 actgaaaccaccaagtaatcatctgttgactcgtcatacccaaaaccataa 485  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  24369526 actgaaaccaccaggtaatcatctgttgactcgtcatagccaaaaccataa 24369476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 286 - 409
Target Start/End: Complemental strand, 24369704 - 24369581
Alignment:
Q  286 ccaaccagtgaatagctccgttgaagaccgactctactaagggataaacaaaggaagaggacttactacaaaaaggcaaatgggtagggctcacaatttc 385  Q
    |||||||||||||||| || ||||| | ||| ||||||| |||| || |||||||||||  |  || | ||||||||||| ||||||    |||||||||    
T  24369704 ccaaccagtgaatagccccattgaaaagcgattctactacgggacaatcaaaggaagagacccgaccataaaaaggcaaacgggtagtatccacaatttc 24369605  T
Q  386 gttccacgcattagctctcaatga 409  Q
     |||||| ||||||||| ||||||    
T  24369604 cttccacacattagctcacaatga 24369581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 439 - 484
Target Start/End: Complemental strand, 24310213 - 24310168
Alignment:
Q  439 aaaccaccaagtaatcatctgttgactcgtcatacccaaaaccata 484  Q
    |||| ||||||||||||||| ||||||||||||| |||||||||||    
T  24310213 aaactaccaagtaatcatctcttgactcgtcataaccaaaaccata 24310168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 112
Target Start/End: Complemental strand, 24369864 - 24369801
Alignment:
Q  49 taagaacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaac 112  Q
    |||||||||||||||||||||||||||| ||||||   || | || ||| ||||||||||||||    
T  24369864 taagaacaagagttttagtccaagatgaatgcactccatactattccatcacccatatatcaac 24369801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 54 - 423
Target Start/End: Original strand, 49040795 - 49041157
Alignment:
Q  54 acaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaaccgtatcctcatccaccataacccatagacttagaaatcctc 153  Q
    |||||| ||||| |||||||||| ||||||   ||||||| ||| |||||||||||||||||||    |||| ||  |||||||||||| |||||||||     
T  49040795 acaagaattttaatccaagatgaatgcactccatattcttccatcacccatatatcaaccgtatg---atcccccgaaacccatagactgagaaatcctt 49040891  T
Q  154 taaatacccataaaccacaatccgtataacgatggtcaacatcaagatcatctgggagaggaatctctacaagtttcctttcg-actaaatcaaagg-ca 251  Q
    |||||||||||||| ||| |||  || ||      |||   |||| ||||||||||||||| |||  || ||||| ||||||  | ||||| ||||| ||    
T  49040892 taaatacccataaatcacgatcattagaa------tcattttcaatatcatctgggagaggtatcaatagaagttccctttcctattaaatgaaaggaca 49040985  T
Q  252 acaacaagatagtcacgtgtatcataactgaaagccaaccagtgaatagctccgttgaagaccgactctactaagggataaacaaaggaagaggacttac 351  Q
    |||| || |||  ||| | |||||| ||  ||||||||||| |||||||| |||||||||| ||| ||||| | |||||||  | |||||  |  |||||    
T  49040986 acaataacataaacacatatatcatgacgaaaagccaaccaatgaatagccccgttgaagaacgagtctaccatgggataataagaggaaacgaccttac 49041085  T
Q  352 tacaaaaaggcaaatgggtagggctcacaatttcgttccacgcattagctctcaatgagaaaatccccaagt 423  Q
    ||||||||||| ||||| |||  | ||||||||| |||||| |||||||| |||||||||||||| ||||||    
T  49041086 tacaaaaaggccaatggatagtacccacaatttccttccacacattagctttcaatgagaaaatctccaagt 49041157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 48853103 - 48852993
Alignment:
Q  50 aagaacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaaccgtatcctcatccaccataacccatagacttagaaat 149  Q
    |||||||||||| ||||||||||| ||  ||||||||||||||||||| |||||||| ||||| |||   |||||| |||| ||||||| ||||||||||    
T  48853103 aagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgta---tcatcccccatgacccatatacttagaaat 48853007  T
Q  150 cctctaaataccca 163  Q
     |||||||||||||    
T  48853006 tctctaaataccca 48852993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 7878805 - 7878737
Alignment:
Q  50 aagaacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaaccgtatc 118  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||| |||||||| ||||| |||||    
T  7878805 aagaacaagagttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatc 7878737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 7790502 - 7790441
Alignment:
Q  50 aagaacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaa 111  Q
    |||||||||||||||||||||||| || |||||||||||||||||||| |||||||| ||||    
T  7790502 aagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 7790441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 7908724 - 7908663
Alignment:
Q  50 aagaacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaa 111  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||| |||||||| ||||    
T  7908724 aagaacaagagttttattccaagatgaatgcactttgtattctttcatcacccatatttcaa 7908663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 54 - 167
Target Start/End: Complemental strand, 48863683 - 48863573
Alignment:
Q  54 acaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaaccgtatcctcatccaccataacccatagacttagaaatcctc 153  Q
    |||||||||||| |||||||||| ||||||  |||||||| ||| |||||||| |||||| ||   | |||| ||  |||||||||||| ||| ||||||    
T  48863683 acaagagttttaatccaagatgaatgcactccgtattcttccatcacccatatgtcaacctta---tgatcccccgaaacccatagactgagagatcctc 48863587  T
Q  154 taaatacccataaa 167  Q
    ||||||||||||||    
T  48863586 taaatacccataaa 48863573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 174
Target Start/End: Original strand, 49038518 - 49038638
Alignment:
Q  51 agaacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaaccgtatcctcatccaccataacccatagacttagaaatc 150  Q
    ||||||||||| ||||||||||| || || ||||||||||||||||| |||||||| ||||| |||    ||  | ||||| |||||| ||| ||||||     
T  49038518 agaacaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttcaacggta---gcacgctccatagcccatacactgagaaatt 49038614  T
Q  151 ctctaaatacccataaaccacaat 174  Q
    ||| |||||||||||||| |||||    
T  49038615 ctcgaaatacccataaacaacaat 49038638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 7771817 - 7771761
Alignment:
Q  50 aagaacaagagttttagtccaagatgactgcactttgtattctttcattacccatat 106  Q
    ||||||||||||||||||||| || || |||||||||||||||||||| ||||||||    
T  7771817 aagaacaagagttttagtccatgacgaatgcactttgtattctttcatcacccatat 7771761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 7773464 - 7773532
Alignment:
Q  50 aagaacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaaccgtatc 118  Q
    ||||||||||| |||| ||||||| || |||||||||||||||||||| |||||||| ||||| |||||    
T  7773464 aagaacaagagatttaatccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatc 7773532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 45371713 - 45371781
Alignment:
Q  50 aagaacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaaccgtatc 118  Q
    |||||||| ||| ||||||||||| || |||||||||||||||||||| |||||||| ||||| |||||    
T  45371713 aagaacaaaagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaactgtatc 45371781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 50666734 - 50666682
Alignment:
Q  53 aacaagagttttagtccaagatgactgcactttgtattctttcattacccata 105  Q
    |||||||||||||||||||||||| |||||||||||||||| ||| |||||||    
T  50666734 aacaagagttttagtccaagatgaatgcactttgtattcttacatcacccata 50666682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 437 - 484
Target Start/End: Original strand, 48147754 - 48147801
Alignment:
Q  437 tgaaaccaccaagtaatcatctgttgactcgtcatacccaaaaccata 484  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  48147754 tgaaaccaccaagtaatcatctgttaactggtcatacccaaaaccata 48147801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 48156072 - 48156130
Alignment:
Q  54 acaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaac 112  Q
    |||||||||||||||||||| || |||||||||||||| ||||| |||||||| |||||    
T  48156072 acaagagttttagtccaagaagaatgcactttgtattcgttcatcacccatatttcaac 48156130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 48864457 - 48864395
Alignment:
Q  50 aagaacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaac 112  Q
    |||||||||| | ||||||||||| || |||||||||||||||||||| |||||||| |||||    
T  48864457 aagaacaagaatcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 48864395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 7813899 - 7813838
Alignment:
Q  50 aagaacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaa 111  Q
    |||||||||||||||| ||||||| || |||||||||||||||||||  |||||||| ||||    
T  7813899 aagaacaagagttttattccaagacgaatgcactttgtattctttcaacacccatatttcaa 7813838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 48147358 - 48147414
Alignment:
Q  56 aagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaac 112  Q
    |||||| ||||||||||| || |||||||||||||||||||| |||||||| |||||    
T  48147358 aagagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 48147414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 437 - 484
Target Start/End: Original strand, 48735419 - 48735466
Alignment:
Q  437 tgaaaccaccaagtaatcatctgttgactcgtcatacccaaaaccata 484  Q
    ||||||||||||||||||||||||| | | ||||||||||||||||||    
T  48735419 tgaaaccaccaagtaatcatctgttaaatggtcatacccaaaaccata 48735466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 49043810 - 49043869
Alignment:
Q  53 aacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaac 112  Q
    ||||||||| |||||||| || || |||||||||||||||||||| |||||||| |||||    
T  49043810 aacaagagtcttagtccatgacgaatgcactttgtattctttcatcacccatatttcaac 49043869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 7786886 - 7786825
Alignment:
Q  50 aagaacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaa 111  Q
    |||||||||||| ||| |||||||| | ||||| |||||||||||||| |||||||| ||||    
T  7786886 aagaacaagagtcttattccaagataaatgcacgttgtattctttcatcacccatatttcaa 7786825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 7801059 - 7800998
Alignment:
Q  50 aagaacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaa 111  Q
    |||||||||||||||| ||||||| || ||||||||||| |||||||  |||||||| ||||    
T  7801059 aagaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttcaa 7800998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 435 - 484
Target Start/End: Original strand, 45372107 - 45372156
Alignment:
Q  435 actgaaaccaccaagtaatcatctgttgactcgtcatacccaaaaccata 484  Q
    |||||||||||||||||||||||| || |||| ||||||||||| |||||    
T  45372107 actgaaaccaccaagtaatcatctcttaactcatcatacccaaatccata 45372156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 431 - 488
Target Start/End: Complemental strand, 48902982 - 48902925
Alignment:
Q  431 tgaaactgaaaccaccaagtaatcatctgttgactcgtcatacccaaaaccataaaaa 488  Q
    ||||| ||| |||| ||||||||||||| |||| | ||||||||||||||||||||||    
T  48902982 tgaaattgataccatcaagtaatcatctcttgagtggtcatacccaaaaccataaaaa 48902925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 435 - 484
Target Start/End: Original strand, 49041199 - 49041248
Alignment:
Q  435 actgaaaccaccaagtaatcatctgttgactcgtcatacccaaaaccata 484  Q
    |||||||||| |||||||||||||||||||   |||||||||||||||||    
T  49041199 actgaaaccatcaagtaatcatctgttgacggatcatacccaaaaccata 49041248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 7237386 - 7237438
Alignment:
Q  54 acaagagttttagtccaagatgactgcactttgtattctttcattacccatat 106  Q
    |||||||||||||||||| | || |||| ||||||||||||||| ||||||||    
T  7237386 acaagagttttagtccaaaacgaatgcattttgtattctttcatcacccatat 7237438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 437 - 481
Target Start/End: Complemental strand, 7908369 - 7908325
Alignment:
Q  437 tgaaaccaccaagtaatcatctgttgactcgtcatacccaaaacc 481  Q
    |||||||||||||||||||||| |||||| |||||| ||||||||    
T  7908369 tgaaaccaccaagtaatcatctcttgactggtcataaccaaaacc 7908325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 483
Target Start/End: Original strand, 7237763 - 7237806
Alignment:
Q  440 aaccaccaagtaatcatctgttgactcgtcatacccaaaaccat 483  Q
    ||||||||||||||||||| |||||| |||||| ||||||||||    
T  7237763 aaccaccaagtaatcatctcttgactggtcataaccaaaaccat 7237806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 483
Target Start/End: Complemental strand, 7771439 - 7771396
Alignment:
Q  440 aaccaccaagtaatcatctgttgactcgtcatacccaaaaccat 483  Q
    ||||||||||||||||||| |||||| |||||| ||||||||||    
T  7771439 aaccaccaagtaatcatctcttgactggtcataaccaaaaccat 7771396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 483
Target Start/End: Complemental strand, 7790124 - 7790081
Alignment:
Q  440 aaccaccaagtaatcatctgttgactcgtcatacccaaaaccat 483  Q
    ||||||||||||||||||| |||||| |||||| ||||||||||    
T  7790124 aaccaccaagtaatcatctcttgactggtcataaccaaaaccat 7790081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 484
Target Start/End: Original strand, 45384905 - 45384952
Alignment:
Q  437 tgaaaccaccaagtaatcatctgttgactcgtcatacccaaaaccata 484  Q
    |||||||||||| ||||||| ||||||||  |||||||||||||||||    
T  45384905 tgaaaccaccaaataatcatttgttgactgatcatacccaaaaccata 45384952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 484
Target Start/End: Original strand, 50250818 - 50250865
Alignment:
Q  437 tgaaaccaccaagtaatcatctgttgactcgtcatacccaaaaccata 484  Q
    |||||||||||| |||||||||||||| | |||||| |||||||||||    
T  50250818 tgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccata 50250865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 437 - 483
Target Start/End: Complemental strand, 7877773 - 7877727
Alignment:
Q  437 tgaaaccaccaagtaatcatctgttgactcgtcatacccaaaaccat 483  Q
    |||||||||||||||||||||| |||| | |||||| ||||||||||    
T  7877773 tgaaaccaccaagtaatcatctcttgattggtcataaccaaaaccat 7877727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 45384531 - 45384593
Alignment:
Q  50 aagaacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaac 112  Q
    ||||||| |||| || |||||||| || |||||||| ||||||||||| |||||||| |||||    
T  45384531 aagaacacgagtctttgtccaagacgaatgcactttatattctttcatcacccatatttcaac 45384593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 47208287 - 47208233
Alignment:
Q  62 tttagtccaagatgactgcactttgtattctttcattacccatatatcaaccgta 116  Q
    ||||||||||||||| || ||||||||||||||||| |||| ||| |||| ||||    
T  47208287 tttagtccaagatgattgtactttgtattctttcatcacccttatttcaagcgta 47208233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 437 - 483
Target Start/End: Original strand, 48705396 - 48705442
Alignment:
Q  437 tgaaaccaccaagtaatcatctgttgactcgtcatacccaaaaccat 483  Q
    |||||| ||||||||||||||||||||||  ||||| ||||||||||    
T  48705396 tgaaacaaccaagtaatcatctgttgactgatcatatccaaaaccat 48705442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 48903366 - 48903316
Alignment:
Q  61 ttttagtccaagatgactgcactttgtattctttcattacccatatatcaa 111  Q
    |||||||||||||  | |||||||||||||||||||| |||||||| ||||    
T  48903366 ttttagtccaagacaaatgcactttgtattctttcatcacccatatttcaa 48903316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 7766064 - 7766003
Alignment:
Q  50 aagaacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaa 111  Q
    ||||||||| || |||||||| || || | |||||||||||||||||| |||||||| ||||    
T  7766064 aagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcacccatatttcaa 7766003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 37826632 - 37826681
Alignment:
Q  53 aacaagagttttagtccaagatgactgcactttgtattctttcattaccc 102  Q
    ||||||||| ||||||||||| || |||| ||||||||||||||| ||||    
T  37826632 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcaccc 37826681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 484
Target Start/End: Original strand, 48170597 - 48170646
Alignment:
Q  435 actgaaaccaccaagtaatcatctgttgactcgtcatacccaaaaccata 484  Q
    ||||||||||| |||||||||||| || |||  |||||||||||||||||    
T  48170597 actgaaaccactaagtaatcatctcttaactgatcatacccaaaaccata 48170646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 484
Target Start/End: Complemental strand, 48852708 - 48852663
Alignment:
Q  439 aaaccaccaagtaatcatctgttgactcgtcatacccaaaaccata 484  Q
    |||| |||||||||||||| ||||||  ||||||||||||||||||    
T  48852708 aaactaccaagtaatcatcggttgacgggtcatacccaaaaccata 48852663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 484
Target Start/End: Complemental strand, 48870584 - 48870539
Alignment:
Q  439 aaaccaccaagtaatcatctgttgactcgtcatacccaaaaccata 484  Q
    ||||||| ||||||||||||||| |||  |||||||||||||||||    
T  48870584 aaaccactaagtaatcatctgttaactgatcatacccaaaaccata 48870539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 484
Target Start/End: Complemental strand, 48875888 - 48875843
Alignment:
Q  439 aaaccaccaagtaatcatctgttgactcgtcatacccaaaaccata 484  Q
    ||||||||||||||||||||| | |||  |||||||||||||||||    
T  48875888 aaaccaccaagtaatcatctgctaactgatcatacccaaaaccata 48875843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 484
Target Start/End: Complemental strand, 48886270 - 48886225
Alignment:
Q  439 aaaccaccaagtaatcatctgttgactcgtcatacccaaaaccata 484  Q
    ||||||| ||||||||||||||| |||  |||||||||||||||||    
T  48886270 aaaccactaagtaatcatctgttaactgatcatacccaaaaccata 48886225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 484
Target Start/End: Complemental strand, 48898746 - 48898701
Alignment:
Q  439 aaaccaccaagtaatcatctgttgactcgtcatacccaaaaccata 484  Q
    ||||||| ||||||||||||||| |||  |||||||||||||||||    
T  48898746 aaaccactaagtaatcatctgttaactgatcatacccaaaaccata 48898701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 48861697 - 48861649
Alignment:
Q  63 ttagtccaagatgactgcactttgtattctttcattacccatatatcaa 111  Q
    |||||||||||  | ||||||||||||||||| ||||||||||| ||||    
T  48861697 ttagtccaagacaaatgcactttgtattcttttattacccatatttcaa 48861649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 440 - 484
Target Start/End: Original strand, 49048613 - 49048657
Alignment:
Q  440 aaccaccaagtaatcatctgttgactcgtcatacccaaaaccata 484  Q
    ||||||||| ||||||||||||||   ||||||||||||||||||    
T  49048613 aaccaccaaataatcatctgttgatgggtcatacccaaaaccata 49048657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 38 - 173
Target Start/End: Original strand, 42561960 - 42562092
Alignment:
Q  38 atcataagtagtaagaacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaaccgtatcctcatccaccataacccat 137  Q
    ||||||| ||| |||||||||| | |||||||||||||| |||||||||||||||||||| ||||||||||||||   ||  || |||  || || ||||    
T  42561960 atcataaataggaagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaac---attatcgtccctcaaaatccat 42562056  T
Q  138 agacttagaaatcctctaaatacccataaaccacaa 173  Q
    ||||| |||||||||||||||||||| |||||||||    
T  42562057 agactgagaaatcctctaaatacccaaaaaccacaa 42562092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 437 - 484
Target Start/End: Complemental strand, 29696250 - 29696203
Alignment:
Q  437 tgaaaccaccaagtaatcatctgttgactcgtcatacccaaaaccata 484  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29696250 tgaaatcaccaagtaatcatctgttgactcgtcatacccaaaaccata 29696203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 118
Target Start/End: Complemental strand, 9120182 - 9120117
Alignment:
Q  53 aacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaaccgtatc 118  Q
    ||||||||||||  ||||||| || |||||||||||||||||||| |||||||| ||||| |||||    
T  9120182 aacaagagttttcttccaagaggaatgcactttgtattctttcatcacccatatttcaactgtatc 9120117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 206 - 323
Target Start/End: Original strand, 42562119 - 42562236
Alignment:
Q  206 tgggagaggaatctctacaagtttcctttcgactaaatcaaaggcaacaacaagatagtcacgtgtatcataactgaaagccaaccagtgaatagctccg 305  Q
    ||| ||| ||||||||| ||||||||||||   ||||| ||||||||||| || || ||||  | |||||| ||  | |||||||||||||||||| ||     
T  42562119 tggaagaagaatctctagaagtttcctttccgttaaatgaaaggcaacaataacatggtcatatatatcatgacgaagagccaaccagtgaatagcccca 42562218  T
Q  306 ttgaagaccgactctact 323  Q
    ||||||| ||||||||||    
T  42562219 ttgaagaacgactctact 42562236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 484
Target Start/End: Complemental strand, 179083 - 179031
Alignment:
Q  432 gaaactgaaaccaccaagtaatcatctgttgactcgtcatacccaaaaccata 484  Q
    |||| ||| |||| ||||||||||||||||||||| |||||||||||||||||    
T  179083 gaaattgacaccaacaagtaatcatctgttgactcctcatacccaaaaccata 179031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 118
Target Start/End: Complemental strand, 179462 - 179412
Alignment:
Q  68 ccaagatgactgcactttgtattctttcattacccatatatcaaccgtatc 118  Q
    ||||||||| |||||||||||||||||||| |||||||| ||||| |||||    
T  179462 ccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatc 179412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 414
Target Start/End: Original strand, 29712421 - 29712456
Alignment:
Q  379 caatttcgttccacgcattagctctcaatgagaaaa 414  Q
    |||||||||||||||||| |||||||||||||||||    
T  29712421 caatttcgttccacgcatcagctctcaatgagaaaa 29712456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 438 - 484
Target Start/End: Original strand, 29712504 - 29712550
Alignment:
Q  438 gaaaccaccaagtaatcatctgttgactcgtcatacccaaaaccata 484  Q
    |||| ||| |||||||||||  |||||||||||||||||||||||||    
T  29712504 gaaagcacgaagtaatcatcccttgactcgtcatacccaaaaccata 29712550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 29712160 - 29712200
Alignment:
Q  127 ccataacccatagacttagaaatcctctaaatacccataaa 167  Q
    ||||| |||||||||| ||| ||||||||||||||||||||    
T  29712160 ccatatcccatagactgagacatcctctaaatacccataaa 29712200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 175
Target Start/End: Original strand, 11015134 - 11015252
Alignment:
Q  54 acaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaaccgtatcctcatccaccataacccatagacttagaaatcctc 153  Q
    ||||||||||||  |||||| || |||||||||||||||||||| |||||||| ||||| || ||  ||||| ||||| ||||||||||||||||| |||    
T  11015134 acaagagttttaacccaagacgaatgcactttgtattctttcataacccatatttcaactgt-tc--catcctccatagcccatagacttagaaattctc 11015230  T
Q  154 taaatacccataaaccacaatc 175  Q
     ||||| ||| ||| |||||||    
T  11015231 caaatatccacaaatcacaatc 11015252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 175
Target Start/End: Original strand, 11005571 - 11005689
Alignment:
Q  54 acaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaaccgtatcctcatccaccataacccatagacttagaaatcctc 153  Q
    |||||||  ||||||||||| || |||||||||||||||||||| |||||||| ||||  ||    |||||| ||||| |||||||||| |||||| |||    
T  11005571 acaagagccttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgt---ttcatcccccatagcccatagactaagaaattctc 11005667  T
Q  154 taaatacccataaaccacaatc 175  Q
     ||||| ||| ||| |||||||    
T  11005668 caaatatccacaaatcacaatc 11005689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 11024146 - 11024203
Alignment:
Q  54 acaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaa 111  Q
    |||||||| ||||||||||| || |||||||||||||||||||| |||||||| ||||    
T  11024146 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 11024203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 435 - 484
Target Start/End: Original strand, 11005988 - 11006037
Alignment:
Q  435 actgaaaccaccaagtaatcatctgttgactcgtcatacccaaaaccata 484  Q
    ||||| |||||||||||||||||| |||| | ||||||||||||||||||    
T  11005988 actgataccaccaagtaatcatctcttgaatggtcatacccaaaaccata 11006037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 435 - 484
Target Start/End: Original strand, 11024563 - 11024612
Alignment:
Q  435 actgaaaccaccaagtaatcatctgttgactcgtcatacccaaaaccata 484  Q
    ||||| |||||||||||||||||| |||| | ||||||||||||||||||    
T  11024563 actgataccaccaagtaatcatctcttgaatggtcatacccaaaaccata 11024612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 439 - 488
Target Start/End: Original strand, 47451946 - 47451995
Alignment:
Q  439 aaaccaccaagtaatcatctgttgactcgtcatacccaaaaccataaaaa 488  Q
    ||||||| ||||||||||||||| |||||||||||||||| | |||||||    
T  47451946 aaaccactaagtaatcatctgttaactcgtcatacccaaaccaataaaaa 47451995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 484
Target Start/End: Original strand, 11015551 - 11015600
Alignment:
Q  435 actgaaaccaccaagtaatcatctgttgactcgtcatacccaaaaccata 484  Q
    ||||| |||||||||||||||||| || | | ||||||||||||||||||    
T  11015551 actgataccaccaagtaatcatctcttaaatggtcatacccaaaaccata 11015600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 21016237 - 21016181
Alignment:
Q  56 aagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaac 112  Q
    |||||| ||||||||||| || || ||||||||||||||||| |||||||| |||||    
T  21016237 aagagtcttagtccaagacgaatgtactttgtattctttcataacccatatttcaac 21016181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 14197337 - 14197377
Alignment:
Q  65 agtccaagatgactgcactttgtattctttcattacccata 105  Q
    |||||||||||| |||| ||||||||||||||| |||||||    
T  14197337 agtccaagatgaatgcattttgtattctttcatcacccata 14197377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 21979420 - 21979472
Alignment:
Q  203 atctgggagaggaatctctacaagtttcctttcgactaaatcaaaggcaacaa 255  Q
    |||||| ||||| ||||| | |||||||||||| | |||||||||||||||||    
T  21979420 atctggaagagggatctcaaaaagtttcctttctattaaatcaaaggcaacaa 21979472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 440 - 484
Target Start/End: Original strand, 21979678 - 21979722
Alignment:
Q  440 aaccaccaagtaatcatctgttgactcgtcatacccaaaaccata 484  Q
    ||||||||||||||||| | |||||| |||||| |||||||||||    
T  21979678 aaccaccaagtaatcatttcttgactggtcataaccaaaaccata 21979722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 484
Target Start/End: Original strand, 4031938 - 4031985
Alignment:
Q  437 tgaaaccaccaagtaatcatctgttgactcgtcatacccaaaaccata 484  Q
    ||||||||||| ||| |||| |||||||| ||||||||||||||||||    
T  4031938 tgaaaccaccaggtagtcatttgttgactggtcatacccaaaaccata 4031985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 15349306 - 15349244
Alignment:
Q  49 taagaacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaa 111  Q
    ||||||||||| | || |||||||| || | |||||||||||||||||| |||||||| ||||    
T  15349306 taagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 15349244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 4031578 - 4031627
Alignment:
Q  63 ttagtccaagatgactgcactttgtattctttcattacccatatatcaac 112  Q
    ||||||||||| || |||| ||||||||||||||| |||||||| |||||    
T  4031578 ttagtccaagacgaatgcattttgtattctttcataacccatatttcaac 4031627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 484
Target Start/End: Complemental strand, 12200349 - 12200304
Alignment:
Q  439 aaaccaccaagtaatcatctgttgactcgtcatacccaaaaccata 484  Q
    |||||||||||||||||||| |||||  |||||| |||||||||||    
T  12200349 aaaccaccaagtaatcatctcttgaccggtcataaccaaaaccata 12200304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 484
Target Start/End: Complemental strand, 12444777 - 12444732
Alignment:
Q  439 aaaccaccaagtaatcatctgttgactcgtcatacccaaaaccata 484  Q
    |||||||||||||||||||| |||||  |||||| |||||||||||    
T  12444777 aaaccaccaagtaatcatctcttgaccggtcataaccaaaaccata 12444732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 48884246 - 48884184
Alignment:
Q  50 aagaacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaac 112  Q
    |||||||||||| |||||||||||    |||||||||||||||||||| ||| |||| |||||    
T  48884246 aagaacaagagtcttagtccaagacatatgcactttgtattctttcatcacctatatttcaac 48884184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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