View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13000_low_32 (Length: 241)

Name: NF13000_low_32
Description: NF13000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13000_low_32
NF13000_low_32
[»] chr2 (3 HSPs)
chr2 (18-241)||(32071899-32072120)
chr2 (18-239)||(32031432-32031651)
chr2 (18-239)||(32064567-32064786)


Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 32071899 - 32072120
Alignment:
Q  18 gtttgattttggagcctaaacgtttggctttgtattataagagtgaaatttcacctatgccaattaaatattggttttcatcttcttggttttcatttga 117  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32071899 gtttgattttggagcctaaaggtttggctttgtattataagagtgaaatttcacctatgccaattaaatattggttttcatcttcttggttttcatttga 32071998  T
Q  118 aaaaggctcattagaaaatgtcacattaaaatctgatcccgaatcttttgagtatggatttgannnnnnnnngttgccaattctaccacttttggtaaaa 217  Q
    ||||||||||||||||||||||||| | ||||||||||| ||||||||||||| |||||||||         ||||||||||||||||||| |||||  |    
T  32071999 aaaaggctcattagaaaatgtcacacttaaatctgatccagaatcttttgagtttggatttga--tttttttgttgccaattctaccacttctggtagta 32072096  T
Q  218 gtatcattggtaggccagtgaaga 241  Q
    ||||||||||||||||||||||||    
T  32072097 gtatcattggtaggccagtgaaga 32072120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 32031432 - 32031651
Alignment:
Q  18 gtttgattttggagcctaaacgtttggctttgtattataagagtgaaatttcacctatgccaattaaatattggttttcatcttcttggttttcatttga 117  Q
    ||||| |||||||||||||| |||||||||| ||||||||||||  || ||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  32031432 gtttggttttggagcctaaaggtttggctttatattataagagtacaaattctcctaggccaattaaatattggttttcatcttcttggttttcatttga 32031531  T
Q  118 aaaaggctcattagaaaatgtcacattaaaatctgatcccgaatcttttgagtatggatttgannnnnnnnngttgccaattctaccacttttggtaaaa 217  Q
    |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||         ||||||||||||||||||| |||||  |    
T  32031532 aaaaggttcattagaaaatgtcacactaaaatctgatccagaatcttttgagtatggatttga--tttttttgttgccaattctaccacttctggtagta 32031629  T
Q  218 gtatcattggtaggccagtgaa 239  Q
    ||||||||||||||||||||||    
T  32031630 gtatcattggtaggccagtgaa 32031651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 32064567 - 32064786
Alignment:
Q  18 gtttgattttggagcctaaacgtttggctttgtattataagagtgaaatttcacctatgccaattaaatattggttttcatcttcttggttttcatttga 117  Q
    ||||| ||||||| |||||| |||||||||| ||||||| ||||  || ||| |||| ||||| ||||||||||||||| ||||||||||||||||||||    
T  32064567 gtttggttttggaacctaaaggtttggctttatattataggagtacaaattctcctaggccaagtaaatattggttttcttcttcttggttttcatttga 32064666  T
Q  118 aaaaggctcattagaaaatgtcacattaaaatctgatcccgaatcttttgagtatggatttgannnnnnnnngttgccaattctaccacttttggtaaaa 217  Q
    ||||||||||||||||||||||||| | ||||||||||| ||||||||||||| |||||||||         ||| ||||||||||||||| ||| || |    
T  32064667 aaaaggctcattagaaaatgtcacacttaaatctgatccagaatcttttgagtttggatttga--ttttcatgttaccaattctaccacttctggcaata 32064764  T
Q  218 gtatcattggtaggccagtgaa 239  Q
    ||||||||||||||||||||||    
T  32064765 gtatcattggtaggccagtgaa 32064786  T

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