View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13000_low_33 (Length: 240)

Name: NF13000_low_33
Description: NF13000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13000_low_33
NF13000_low_33
[»] chr1 (2 HSPs)
chr1 (76-229)||(26453251-26453425)
chr1 (17-81)||(26453517-26453581)


Alignment Details
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 76 - 229
Target Start/End: Complemental strand, 26453425 - 26453251
Alignment:
Q  76 atttagattgaattttatgtttgatattcttattgttttaatgactttcttaataatctttt---------------------attccttaacatatttc 154  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||                     |||||||||||||||||    
T  26453425 attttgattgaattttatgtttgatattcttattgttttaatggctttcttaataatcttttgcgctttccatttttttttttattccttaacatatttc 26453326  T
Q  155 aatgtttgatcttggcgaggtgaaggaatatgattggaattactgatcaagaagaagtctcaatattttcttcga 229  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26453325 aatgtttgatcttggtgaggtgaaggaatatgattggaattactgatcaagaagaagtctcaatattttcttcga 26453251  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 26453581 - 26453517
Alignment:
Q  17 atatctcactatgatgttgaagaagacaatgttgtttgttttagcctctcttcaatgccatttag 81  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26453581 atatctcattatgatgttgaagaagacaatgttgtttgttttagcctctcttcaatgccatttag 26453517  T

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