View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13000_low_36 (Length: 237)
Name: NF13000_low_36
Description: NF13000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13000_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 27087470 - 27087256
Alignment:
| Q |
7 |
aacttttcgcatacccgaaataaaactcacggagttttaataatagaattttattagggtgaagatggttacgatggacaaatgtggaatcaaaatactc |
106 |
Q |
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| T |
27087470 |
aacttttcgcatacccgaaataaaactcacggagttttaataattgaattttattagggtgaagatggttacgatggaggaatgtggaaccaaa-tactc |
27087372 |
T |
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| Q |
107 |
gacataatttacatgtaataatttggaataaaatagtttcaggtatttagttttacgttgcggctacttcagaaccaaatccctacaaaggataatctag |
206 |
Q |
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| T |
27087371 |
aacataatttacatgtaataatttggaacaaaatagtttcgggtatctatttttacgtggcggctactttagaaccaaatccctacaaaggataattcag |
27087272 |
T |
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| Q |
207 |
ttcaacgtgcaatact |
222 |
Q |
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|||||||||||||||| |
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| T |
27087271 |
ttcaacgtgcaatact |
27087256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 205
Target Start/End: Original strand, 43654178 - 43654215
Alignment:
| Q |
168 |
ggctacttcagaaccaaatccctacaaaggataatcta |
205 |
Q |
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|||| |||||||||| |||||||||||||||||||||| |
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| T |
43654178 |
ggcttcttcagaaccgaatccctacaaaggataatcta |
43654215 |
T |
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