View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13000_low_6 (Length: 447)
Name: NF13000_low_6
Description: NF13000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13000_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 35696787 - 35697215
Alignment:
| Q |
1 |
acgaagcctaacaaacagaatcaaaactatgacaataacagtaattgtgatgccaagcatatgatgacgcttcaacgatcacaaagcgnnnnnnntgatt |
100 |
Q |
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| T |
35696787 |
acgaagcctaacaaacagaatcaaaactatgacaataacagtaattgtgatgccaagcatatgatgacgcttcaacgatcacaaagcgaaaaaaatgatt |
35696886 |
T |
|
| Q |
101 |
cgacgattaatgattatgtttataatcctaatggaaaaaacggttacggtggtgaatgtgagtctgaaattagtgttcctactgggaagaaaggtgtgat |
200 |
Q |
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| T |
35696887 |
cgacgattaatgattatgtttataatcctaatggaaaaaacggttacggtggtgaatgtgagtctgaaattagtgttcctactgggaagaaaggtgtgat |
35696986 |
T |
|
| Q |
201 |
cgtgaacgcgaatggatcgttgtgttcggatgttggaccttcaccgtctgtggtggctgccgcgatagcgaaaggattgtatccgttgccattgcacgtg |
300 |
Q |
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| T |
35696987 |
cgtgaacgcgaatggatcgttgtgttcggatgttggaccttcaccgtctgtggtggctgccgcgatagcgaaaggattgtatccgttgccattgcacgtg |
35697086 |
T |
|
| Q |
301 |
ccaagaaagacggtgaataattcaatgtttgagaaatggccgccggagaaggacaatggcggggagatgttgaacacgaagatggaccggtggagacaga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35697087 |
ccaagaaagacggtgaataattcaatgtttgagaaatggccgccggagaaggacaatggcggggagatgttgaacacgaagatggaccggtggagacaga |
35697186 |
T |
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| Q |
401 |
tagatataccgcaggtttatgatcatttg |
429 |
Q |
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| T |
35697187 |
tagatataccgcaggtttatgatcatttg |
35697215 |
T |
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