View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13000_low_7 (Length: 424)
Name: NF13000_low_7
Description: NF13000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13000_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-159; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 21 - 380
Target Start/End: Complemental strand, 3214688 - 3214331
Alignment:
| Q |
21 |
taaaagatgcaactaaattatatttctatgtatattgaattacaattcatgaaggtctcttgcatatatagcactgagatccttacctactatagcaggt |
120 |
Q |
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| T |
3214688 |
taaaagatgcaactgaattatatttctatgtat--tgaattacaattgatgaaggtctcttgcttatatagcactgagatccttacctgctatagcaggt |
3214591 |
T |
|
| Q |
121 |
tacaatagtgacatgtgtcagttagttacagttgcatcttaatggatctaaataagcctaatagttcttatactctaatacaaactgatcaaatccaatc |
220 |
Q |
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|||||||||||||||||| ||||||||||| || |||||||||||||||| ||||||||||| ||||| | |||||||||||||| ||||||||||||| |
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| T |
3214590 |
tacaatagtgacatgtgttagttagttacaactgtatcttaatggatctaactaagcctaatacttcttttgctctaatacaaactaatcaaatccaatc |
3214491 |
T |
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| Q |
221 |
caacaaaaaagcgggtctgaacaaaaggcaatgatctacctactatattatggacacgctctagaggcacatgtaagcaagtcttgagacggaatcagga |
320 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3214490 |
caacaagaaagcgggtctgaacaaaaggcaatgatctaccgactatattatggacacgctctagaggcacatgtaagcaagtcttgagacggaatcagga |
3214391 |
T |
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| Q |
321 |
ccgtatgatgataatcacatcatgatttataagcaattgcctcgaatgatagttgctcaa |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3214390 |
ccgtatgatgataatcacatcatgatttataagcaattgcctcgaatgatagttgttcaa |
3214331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 92 - 200
Target Start/End: Complemental strand, 3220048 - 3219940
Alignment:
| Q |
92 |
cactgagatccttacctactatagcaggttacaatagtgacatgtgtcagttagttacagttgcatcttaatggatctaaataagcctaatagttcttat |
191 |
Q |
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||||||||||||||||| |||||||||||| |||||||||||||||| ||||| ||||||||| |||||||| ||||||| ||||||||||||||||||| |
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| T |
3220048 |
cactgagatccttacctgctatagcaggttgcaatagtgacatgtgttagttaattacagttgtatcttaatagatctaactaagcctaatagttcttat |
3219949 |
T |
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| Q |
192 |
actctaata |
200 |
Q |
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||||||||| |
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| T |
3219948 |
actctaata |
3219940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 3221395 - 3221320
Alignment:
| Q |
21 |
taaaagatgcaactaaattatatttctatgtatattgaattacaattcatgaaggtctcttgcatatatagcactgag |
98 |
Q |
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|||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
3221395 |
taaaagatgcaacttaattatatttctatgtat--tgaattacaattgatgaaggtctcttgcttatatagcactgag |
3221320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 407
Target Start/End: Complemental strand, 3214269 - 3214239
Alignment:
| Q |
377 |
tcaaaatacatacacattccctacacttcat |
407 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
3214269 |
tcaaaatacatacacattccctacacttcat |
3214239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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