View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13000_low_8 (Length: 424)
Name: NF13000_low_8
Description: NF13000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13000_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 133 - 407
Target Start/End: Original strand, 7965500 - 7965781
Alignment:
| Q |
133 |
acaaattattattagtctaagtgataa-----tttatatttcttaattagttatttaaaa------ctatgatttgtatatatatttcttatataggtgg |
221 |
Q |
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| T |
7965500 |
acaaattattattagtctaaatgataaattaatttatatttcttaatcagttacttaaaagtaaaactatgatttgtata--tatttcttatataggtgg |
7965597 |
T |
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| Q |
222 |
ctgcagaaattaatggattttcattttgatgctatttattgtttaacttttttgacaggggttattgctggtaggtgtggtttcatagggttttaatcca |
321 |
Q |
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| T |
7965598 |
ctgcagaaattaatggattttcattttgatgctatttattgtttaacttttttgaca--ggttattgctggtaggtgtggtttcatagggttttaatcca |
7965695 |
T |
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| Q |
322 |
ttgcatttagaaattcnnnnnnncatataaagtaggttcagcttttgaccagaacaactgcagttgtagtgtgtactgatgaactt |
407 |
Q |
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| T |
7965696 |
ttgcatttagaaattcaaaaaaacatataaagtaggttcagcttttgaccagaacaactgcagttgtagtgtgtactgatgaactt |
7965781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 7965344 - 7965464
Alignment:
| Q |
1 |
cagagaaacaatcccacgtccaattcataatcattttgttcttttaaaagtgaagtgaatatttttatttgaccaccttttttaaaacacattttcagtt |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7965344 |
cagacaaacaatcccacgtccaattcataatcattttgttcttttaaa-gtgaagtgaatatttttatttgaccaccttttttaaaacacaatttcagtt |
7965442 |
T |
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| Q |
101 |
ctttatatttctgcaggataaa |
122 |
Q |
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| T |
7965443 |
ctttatatttctgcaggataaa |
7965464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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