View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13000_low_9 (Length: 415)
Name: NF13000_low_9
Description: NF13000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13000_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 50152772 - 50153171
Alignment:
| Q |
1 |
tagtcacatgtgtcaatgtcatgtcggagataccaacatgcgtcgaacatcggacagttcgatcaaaggtgtcggtgttacata----ctcactaatgta |
96 |
Q |
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| T |
50152772 |
tagtcacatgtgtcaatgtcatgtcggagataccaacatgcatcggacaccggacagttcgatcaaag-tgtcggtgttacatagatactcactaatgta |
50152870 |
T |
|
| Q |
97 |
tgaacactatagtgagtgtttgtaccctcttagaagtttggcacaaagctatgaaatgattcatttattctattgcaaaggactcagaattcttgcccta |
196 |
Q |
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| T |
50152871 |
tgaacactatagtgagtgtttgtaccctcttagaagtttggcacaaagatatgaaatgattcatttattctattgcaaaggactcaaaattcttgcccta |
50152970 |
T |
|
| Q |
197 |
acataattcagttgctacttcctcattgcttagattttttctccttaattgcttcttacacagtaggactatatatctttgatgaagtttctggtaatat |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
50152971 |
acataattcagttgctacttcctcattgcttagattttttctccttaattgcttcttaaacagtatgactatatatctttgatgaagtttctggtaatat |
50153070 |
T |
|
| Q |
297 |
actttgtttttatgaggtttctgataacatactgtgttttttatattagaaaatgaatttatggccttctgtccgttttgccctcgctgcctacactatt |
396 |
Q |
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|||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50153071 |
actttgtttttacgaggtttctggtaacatactgtgttttttatattacaaaatgaatttatggccttctgtccgttttgccctcgctgcctacactatt |
50153170 |
T |
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