View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13001_high_1 (Length: 362)
Name: NF13001_high_1
Description: NF13001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13001_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 15 - 345
Target Start/End: Original strand, 7242388 - 7242718
Alignment:
| Q |
15 |
tatgcattcctgactcagtaatagaccatgtggcttggtgctgccactcaagctcatgactcctgctgaaaatccgcgtcccttcaatcaagagtatgat |
114 |
Q |
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| T |
7242388 |
tatgcattcctgactcagtaatagaccatgtggcttggtgctgccactcaagctcatgactcctgctgaaaatccgtgtcccttcaatcaagagtatgat |
7242487 |
T |
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| Q |
115 |
tgtgatgaaccaaaagtctgttttgtctaaggtaatggcgaaaccaccgagaaggacaacagtcgcccatataaaaccaagagttcccaaaccagttgct |
214 |
Q |
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| T |
7242488 |
tgtgatgaaccaaaagtctgttttgtctaaggtaatggcgaaaccaccgagaaggacaacagtcgcccatataaaaccaagagttcccaaaccagttgct |
7242587 |
T |
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| Q |
215 |
gctttttcaagcacggcaaggcgcagagcaaagagagtaagtttcttttccggtgctctaactgttgttgaagactcattagaatcttctttatcacctt |
314 |
Q |
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| T |
7242588 |
gctttttcaagcacggcaaggcgcagagcaaagagagtaagtttcttttccggtgctctaactgttgttgaagactcattagaatcttctttatcacctt |
7242687 |
T |
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| Q |
315 |
caccactatctctcttctctagactgctaag |
345 |
Q |
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| T |
7242688 |
caccactatctctcttctctagactgctaag |
7242718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 29 - 284
Target Start/End: Complemental strand, 48730753 - 48730497
Alignment:
| Q |
29 |
tcagtaatagaccatgtggcttggtgctgccactcaagctcatgactcctgctgaaaatccgcgtcccttcaatcaagagtatgattgtgatgaaccaaa |
128 |
Q |
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| T |
48730753 |
tcagtaatggaccatgtagcttcattctgccattcaagcttctggcttctgcagaaaattctagtaccttcaacaacaagtatgatggtgacgaaccaaa |
48730654 |
T |
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| Q |
129 |
agtctgttttgtc-taaggtaatggcgaaaccaccgagaaggacaacagtcgcccatataaaaccaagagttcccaaaccagttgctgctttttcaagca |
227 |
Q |
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| T |
48730653 |
aatcagttttttcctaaggtgacagcgaaaccaccaagaaggacaacagtggcccagatgaaactaagagttcctaaccctgttgatgctttttcaagca |
48730554 |
T |
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| Q |
228 |
cggcaaggcgcagagcaaagagagtaagtttcttttccggtgctctaactgttgttg |
284 |
Q |
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| T |
48730553 |
ctgcaagctgaagagcaaaaagggtcagtttcttttctggtgctatatttgttgttg |
48730497 |
T |
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