View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13001_high_3 (Length: 259)
Name: NF13001_high_3
Description: NF13001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13001_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 10 - 243
Target Start/End: Original strand, 33054509 - 33054742
Alignment:
| Q |
10 |
acatcatcatacaccctttaactttctttaccttattcttttccattatcactttcactcactcccaaaccaacgatgcttccatcatgcaaaccctaaa |
109 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33054509 |
acatcatcgtacaccctttaactttctttaccttattcttttccattatcactttcactcactcccaaaccaacgatgcttccatcatgcaaaccctaaa |
33054608 |
T |
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| Q |
110 |
aaacaaccttaaaccgcctctttcacttggttggtccgacccggatccatgtaaatggacccacgtttcttgttctgacgacaaccgtgtaacgagaatc |
209 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33054609 |
aaacaaccttaaaccgcctctttcgcttggttggtccgacccggatccatgtaaatggacccacgtttcttgttccgacgacaaccgtgtaacgagaatc |
33054708 |
T |
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| Q |
210 |
caaatcggtcgccagaatctccatggcacacttc |
243 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
33054709 |
caaatcggtcgccagaatctccatggcacacttc |
33054742 |
T |
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