View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13002_high_1 (Length: 592)
Name: NF13002_high_1
Description: NF13002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13002_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 432
Target Start/End: Original strand, 45598147 - 45598565
Alignment:
| Q |
17 |
aataggaacaaactcacaccaaataaccaaacctaaaaagtgnnnnnnnnnnnnnnnnaatggcacaaaaataaaaacagaatatagatgaattattatg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45598147 |
aataggaacaaactcacaccaaataaccaaacctaaaaagtgtttttgtttttgttttaatggcacaaaaataaaaacagaatatagatgaattattatg |
45598246 |
T |
|
| Q |
117 |
agaaaaagaagaaagatactaaccatgtgaatcttttcattgaagttattaggatcagttggagaagttgatacgtgcacatgaacaaagaagaaacaag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45598247 |
agaaaaagaagaaagatactaaccatgtgaatcttttcattgaagttattaggatcagttggagaagttgatacgtgcacatgaacaaagaagaaacaag |
45598346 |
T |
|
| Q |
217 |
taatggttattgaaagaatgattgcaccgaggaatctccttattagaatggccaatgaaacttttctgcgtttctgcattgatccttttggtaaaacact |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45598347 |
taatggttattgaaagaatgattgcaccgaggaatctccttattagaatggccaatgaaacttttctgcgtttctgcattgatccttttggtaaaacact |
45598446 |
T |
|
| Q |
317 |
gaattcacctaagttgattatgctctttctccctactgaacaatcataaataaattacattataagt---nnnnnnntgacataacagaaaaagaacaaa |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
45598447 |
gaattcacctaagttgattatgctctttctccctactaaacaatcataaataaattacattataagtaaaaaaaaaatgacataacagaaaaagaacaaa |
45598546 |
T |
|
| Q |
414 |
accaggtactaggttcggg |
432 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
45598547 |
accaggtactaggttcggg |
45598565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 469 - 580
Target Start/End: Original strand, 45598597 - 45598708
Alignment:
| Q |
469 |
cagaaaaagaacatgaacctcggactctcggagtgctcatgtttggaacgaggatgatgatgagtatttaaatgaaacgatgatgtttgttttgtttgat |
568 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
45598597 |
cagaaaaagaacatgaacctcggactctcggagtgctcatgtttggaacgaggatgatgatgagtatttaaatgaaacaatgatatttgttttgtttgat |
45598696 |
T |
|
| Q |
569 |
ggtgtttggttt |
580 |
Q |
| |
|
|||||||||||| |
|
|
| T |
45598697 |
ggtgtttggttt |
45598708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 19398246 - 19398307
Alignment:
| Q |
140 |
catgtgaatcttttcattgaagttattaggatcagttggagaagttgatacgtgcacatgaa |
201 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19398246 |
catgtgaatcttttcattgaagtgattaggatcagttggagaagttgatacgtgcacatgaa |
19398307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 42794449 - 42794510
Alignment:
| Q |
140 |
catgtgaatcttttcattgaagttattaggatcagttggagaagttgatacgtgcacatgaa |
201 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42794449 |
catgtgaatcttttcattgaagtgattaggatcagttggagaagttgatatgtgcacatgaa |
42794510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 13510284 - 13510343
Alignment:
| Q |
142 |
tgtgaatcttttcattgaagttattaggatcagttggagaagttgatacgtgcacatgaa |
201 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13510284 |
tgtgaatcttttcattgaagtgattaggatcggttggagaagttgatacgtgcacatgaa |
13510343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University