View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13002_high_4 (Length: 421)

Name: NF13002_high_4
Description: NF13002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13002_high_4
NF13002_high_4
[»] chr5 (6 HSPs)
chr5 (1-407)||(38605592-38606007)
chr5 (42-327)||(40181191-40181480)
chr5 (62-250)||(41885803-41885992)
chr5 (171-259)||(40180547-40180635)
chr5 (171-318)||(38604990-38605140)
chr5 (45-101)||(38605210-38605266)
[»] chr8 (7 HSPs)
chr8 (142-315)||(44459543-44459716)
chr8 (142-315)||(44467076-44467249)
chr8 (188-327)||(34502246-34502385)
chr8 (188-327)||(44460291-44460430)
chr8 (188-327)||(44467824-44467963)
chr8 (47-119)||(44460150-44460222)
chr8 (47-119)||(44467683-44467755)
[»] chr1 (2 HSPs)
chr1 (188-327)||(46359161-46359300)
chr1 (47-119)||(46359020-46359092)
[»] chr6 (2 HSPs)
chr6 (180-247)||(9161362-9161429)
chr6 (181-240)||(410918-410977)


Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 38606007 - 38605592
Alignment:
Q  1 atcccttgtctcatcaatgtgctcttctgaatc------atctcatcttaaactaaggaaaaatgacatactttttctgtgggatttgcttaagaatatt 94  Q
    |||||||||||||||||||||||||||||||||      ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38606007 atcccttgtctcatcaatgtgctcttctgaatctgaatcatctcatcttaaactaaggaagaatgacatactttttctgtgggatttgcttaagaatatt 38605908  T
Q  95 ggccattatcaaacaggccttcttaacccacccattctcaatcaccccatacaattcttctcaattatagggcgagaaggcaagtctgcacttgaagttt 194  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38605907 ggccattatcaaaccggccttcttaacccacccattctcaatcacctcatacaattcttctcaattataggtcgagaaggcaagtctgcacttgaagttt 38605808  T
Q  195 ttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacatattactttacacttcaagctcttttgaccacaacgtgtagtgctgatatcatcca 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38605807 ttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacatattactttacacttcaagctcttttgaccacaacgtgtagtgctgatatcatcca 38605708  T
Q  295 ccaagcctcttctatctgtcaaaacttgctgctg---ctgcactccaaagatgataatcttcactcttcttctcaaggttacacttacacttaccttcct 391  Q
    ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  38605707 ccaagcctcttctatctgtcaaaacttgctgctgctgctgcactccaaagatgataatcgtcactcttcttctcaaggctacacttacacttaccttcct 38605608  T
Q  392 ccttgtccagatgatg 407  Q
    ||||||||||| ||||    
T  38605607 ccttgtccagacgatg 38605592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 42 - 327
Target Start/End: Complemental strand, 40181480 - 40181191
Alignment:
Q  42 ttaaactaaggaaaaatgacatacttttt-ctgtgggatttgcttaagaatattggccattatcaaacaggccttcttaacccacccattctcaatcacc 140  Q
    ||||||||||||| ||  ||||| ||||| ||||||||  |||||||| |||||||||  ||| |||| | | |||||||  ||   ||||||||| | |    
T  40181480 ttaaactaaggaagaaatacatatttttttctgtgggacatgcttaagtatattggccgctatgaaactgactttcttaatgcaaggattctcaataaac 40181381  T
Q  141 ccatacaattcttctcaattatagggcgagaaggcaagtctgcacttgaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacata 240  Q
     |||| ||| ||||||| |||| ||||   |||| ||| | |||||||| ||||||||||  ||||| || ||||||||||||||||||||||| |||||    
T  40181380 tcatagaatccttctcagttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacata 40181281  T
Q  241 ttactttacacttcaagctctttt---gaccacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtcaaaacttgctgct 327  Q
    ||||| |||||| |||||||||||   || ||||| ||||||||||||||| |||||||||||    ||||||| |||||| ||||||||    
T  40181280 ttactatacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaagcagagtctatctatcaaaagttgctgct 40181191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 62 - 250
Target Start/End: Original strand, 41885803 - 41885992
Alignment:
Q  62 atactttttc-tgtgggatttgcttaagaatattggccattatcaaacaggccttcttaacccacccattctcaatcaccccatacaattcttctcaatt 160  Q
    |||||||||| |||||||||||||||||| ||  ||||||||||| || |||||||||||| | |  ||||| ||| | |  ||| ||||||||||||||    
T  41885803 atactttttcctgtgggatttgcttaagactacaggccattatcagaccggccttcttaacgctcggattctaaataaactaatagaattcttctcaatt 41885902  T
Q  161 atagggcgagaaggcaagtctgcacttgaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacatattactttaca 250  Q
    || ||||||||||| ||  ||||||  || ||||||||||  |||||||  |||||||||| |||||||||||| |||||||||||||||    
T  41885903 atggggcgagaagggaaagctgcacacgatgtttttcataaatttgaggcttttcaatgtgagccaaatcaagatacatattactttaca 41885992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 171 - 259
Target Start/End: Complemental strand, 40180635 - 40180547
Alignment:
Q  171 aaggcaagtctgcacttgaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacatattactttacacttcaagct 259  Q
    |||| ||| |||||||||| ||||||||||  |||||||||||||||||||||||||||||||| ||||||  ||||||||| ||||||    
T  40180635 aagggaaggctgcacttgatgtttttcataaatttgaggtctttcaatgtgtgccaaatcaagatacatatatctttacactgcaagct 40180547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 171 - 318
Target Start/End: Complemental strand, 38605140 - 38604990
Alignment:
Q  171 aaggcaagtctgcacttgaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacatattactttacacttcaagctctttt---gac 267  Q
    |||| ||| |||||||  ||||||||||||  |||||||||||||| |||||||| ||||||||  |||||  |||||||||  ||||||||||   |||    
T  38605140 aaggtaagactgcactccaagtttttcataaatttgaggtctttcagtgtgtgcctaatcaagattcatatatctttacactggaagctctttttaagac 38605041  T
Q  268 cacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtcaaaa 318  Q
     ||||  || |||||||||||  |||| |||||| ||||||||||||||||    
T  38605040 aacaagttgcagtgctgatatgctccagcaagccgcttctatctgtcaaaa 38604990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 38605266 - 38605210
Alignment:
Q  45 aactaaggaaaaatgacatactttttctgtgggatttgcttaagaatattggccatt 101  Q
    |||||||| | ||||||||||||||||||||||| ||||||||  ||||||||||||    
T  38605266 aactaaggcagaatgacatactttttctgtgggacttgcttaaacatattggccatt 38605210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 142 - 315
Target Start/End: Original strand, 44459543 - 44459716
Alignment:
Q  142 catacaattcttctcaattatagggcgagaaggcaagtctgcacttgaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacatat 241  Q
    |||||||| |||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||| |||||| |||||||||||||| || ||||||    
T  44459543 catacaatccttctcaattatggggcgagaaggtaaatctgcacttgaagtttttcatatgtttgaggcctttcagtgtgtgccaaatcacgatacatat 44459642  T
Q  242 tactttacacttcaagctcttttgaccacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtca 315  Q
    |||||||| || ||||||||||||||||| || |||||| || |||| ||||| |||||  |||||||||||||    
T  44459643 tactttactctgcaagctcttttgaccacgacctgtagtactcatatgatccatcaagcagcttctatctgtca 44459716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 142 - 315
Target Start/End: Original strand, 44467076 - 44467249
Alignment:
Q  142 catacaattcttctcaattatagggcgagaaggcaagtctgcacttgaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacatat 241  Q
    |||||||| |||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||| |||||| |||||||||||||| || ||||||    
T  44467076 catacaatccttctcaattatggggcgagaaggtaaatctgcacttgaagtttttcatatgtttgaggcctttcagtgtgtgccaaatcacgatacatat 44467175  T
Q  242 tactttacacttcaagctcttttgaccacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtca 315  Q
    |||||||| || ||||||||||||||||| || |||||| || |||| ||||| |||||  |||||||||||||    
T  44467176 tactttactctgcaagctcttttgaccacgacctgtagtactcatatgatccatcaagcagcttctatctgtca 44467249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 188 - 327
Target Start/End: Complemental strand, 34502385 - 34502246
Alignment:
Q  188 gaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacatattactttacacttcaagctcttttgaccacaacgtgtagtgctgata 287  Q
    |||||||||||||  |||||||  |||||||||||||| |||| ||| |||||   |||||||||  |||||||||||| |||||  ||||   ||||||    
T  34502385 gaagtttttcataaatttgaggcatttcaatgtgtgccgaatcgagatacatacacctttacactgaaagctcttttgatcacaagatgtatcactgata 34502286  T
Q  288 tcatccaccaagcctcttctatctgtcaaaacttgctgct 327  Q
    | | |||||||||| ||||||||||||||||  |||||||    
T  34502285 tgacccaccaagccgcttctatctgtcaaaagatgctgct 34502246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 188 - 327
Target Start/End: Original strand, 44460291 - 44460430
Alignment:
Q  188 gaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacatattactttacacttcaagctcttttgaccacaacgtgtagtgctgata 287  Q
    |||||||||||||  |||||||  |||||||| ||||| |||||||| ||||||  |  ||| || |||||| |||||||||||| |||||   ||||||    
T  44460291 gaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatccatacgctgcaagcttttttgaccacaaagtgtaccactgata 44460390  T
Q  288 tcatccaccaagcctcttctatctgtcaaaacttgctgct 327  Q
    | |||||||||||| ||||||| ||||||||  |||||||    
T  44460391 tgatccaccaagccgcttctatgtgtcaaaagatgctgct 44460430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 188 - 327
Target Start/End: Original strand, 44467824 - 44467963
Alignment:
Q  188 gaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacatattactttacacttcaagctcttttgaccacaacgtgtagtgctgata 287  Q
    |||||||||||||  |||||||  |||||||| ||||| |||||||| ||||||  |  ||| || |||||| |||||||||||| |||||   ||||||    
T  44467824 gaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatccatacgctgcaagcttttttgaccacaaagtgtaccactgata 44467923  T
Q  288 tcatccaccaagcctcttctatctgtcaaaacttgctgct 327  Q
    | |||||||||||| ||||||| ||||||||  |||||||    
T  44467924 tgatccaccaagccgcttctatgtgtcaaaagatgctgct 44467963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 44460150 - 44460222
Alignment:
Q  47 ctaaggaaaaatgacatactttttctgtgggatttgcttaagaatattggccattatcaaacaggccttctta 119  Q
    |||||||| || |||||| ||||||||||||| ||||||||| |||||||||| ||||| || | ||||||||    
T  44460150 ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagactgaccttctta 44460222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 44467683 - 44467755
Alignment:
Q  47 ctaaggaaaaatgacatactttttctgtgggatttgcttaagaatattggccattatcaaacaggccttctta 119  Q
    |||||||| || |||||| ||||||||||||| ||||||||| |||||||||| ||||| || | ||||||||    
T  44467683 ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagactgaccttctta 44467755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 188 - 327
Target Start/End: Original strand, 46359161 - 46359300
Alignment:
Q  188 gaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacatattactttacacttcaagctcttttgaccacaacgtgtagtgctgata 287  Q
    |||||||||||||  |||||||  |||||||| ||||| |||||||| ||||||  |  ||| || |||||| |||||||||||| |||||   ||||||    
T  46359161 gaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatccatacgctgcaagcttttttgaccacaaagtgtaccactgata 46359260  T
Q  288 tcatccaccaagcctcttctatctgtcaaaacttgctgct 327  Q
    | |||||||||||| ||||||| ||||||||  |||||||    
T  46359261 tgatccaccaagccgcttctatgtgtcaaaagatgctgct 46359300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 46359020 - 46359092
Alignment:
Q  47 ctaaggaaaaatgacatactttttctgtgggatttgcttaagaatattggccattatcaaacaggccttctta 119  Q
    |||||||| || |||||| ||||||||||||| ||||||||| |||||||||| ||||| || | ||||||||    
T  46359020 ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagactgaccttctta 46359092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 9161362 - 9161429
Alignment:
Q  180 ctgcacttgaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacatattacttt 247  Q
    ||||||||||||||||||||   |||||||||||||||||||| || |||||||| ||||||||||||    
T  9161362 ctgcacttgaagtttttcattaatttgaggtctttcaatgtgttccgaatcaagagacatattacttt 9161429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 240
Target Start/End: Original strand, 410918 - 410977
Alignment:
Q  181 tgcacttgaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacata 240  Q
    ||||||||||||||||||||  |||||||| ||||||||||| ||||||||||| |||||    
T  410918 tgcacttgaagtttttcataaatttgaggtatttcaatgtgttccaaatcaagatacata 410977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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