View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13002_high_9 (Length: 269)
Name: NF13002_high_9
Description: NF13002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13002_high_9 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 2691735 - 2691482
Alignment:
| Q |
1 |
cttaaatttgttatttttaaggcttatctgaacgagttgtgtgaggtttccaagcgaagaaggaatatatccaaagaaatggcaatctggaattgatagg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2691735 |
cttaaatttgttatttttaaggcttatctgaacgagttgtgtgaggtttccaagcgaagaaggaatatatccaaagaaatggcaatctggaattgatagg |
2691636 |
T |
|
| Q |
101 |
gaaattaaagaacgaagcttcccaatggatactggcagtgtaccatagaaacctgtctggtcaagtagtaaattggagagtgaactagattgaaactcgg |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
2691635 |
gaaattaaagaacgaagctttccaatggatactggcagtgtaccatagaaacctgtctcgtcaagtagtaaattggagagtgaactagattgaaactcag |
2691536 |
T |
|
| Q |
201 |
gcaaactaccattgagatttggattatatctcaaatctagaactttcaagtttg |
254 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
2691535 |
gcaaactaccattgagattttgattatatctcaaatctagaactttcaagtttg |
2691482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 5 - 254
Target Start/End: Original strand, 2138832 - 2139081
Alignment:
| Q |
5 |
aatttgttatttttaaggcttatctgaacgagttgtgtgaggtttccaagcgaagaaggaatatatccaaagaaatggcaatctggaattgatagggaaa |
104 |
Q |
| |
|
||||||||||| |||||| ||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2138832 |
aatttgttattattaaggtttatccccgtgagctgtgtgaggttggcaagcgaagaaggaatatatccaaagaaatggcaatctggaattgatagggaga |
2138931 |
T |
|
| Q |
105 |
ttaaagaacgaagcttcccaatggatactggcagtgtaccatagaaacctgtctggtcaagtagtaaattggagagtgaactagattgaaactcgggcaa |
204 |
Q |
| |
|
||||||||| |||| | |||||||||| ||| ||||| |||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||| || |
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|
| T |
2138932 |
ttaaagaaccaagccttccaatggatattgggagtgtgccatagaaacctgtcttgtcaagtagtaacttggtgagtgaactagattgaaactcgggtaa |
2139031 |
T |
|
| Q |
205 |
actaccattgagatttggattatatctcaaatctagaactttcaagtttg |
254 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| ||| || |||||||| |
|
|
| T |
2139032 |
acttccattgagatttggattatatctcaaatccagatattccaagtttg |
2139081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 3 - 254
Target Start/End: Complemental strand, 2245558 - 2245307
Alignment:
| Q |
3 |
taaatttgttatttttaaggcttatctgaacgagttgtgtgaggtttccaagcgaagaaggaatatatccaaagaaatggcaatctggaattgataggga |
102 |
Q |
| |
|
|||||||||||||| ||||| |||| | ||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
2245558 |
taaatttgttatttctaaggtatatcctgatgagctgtgtgaggttaccaagagaagaaggaatatatccaaaaaaatggcaatctggaattgatagaat |
2245459 |
T |
|
| Q |
103 |
aattaaagaacgaagcttcccaatggatactggcagtgtaccatagaaacctgtctggtcaagtagtaaattggagagtgaactagattgaaactcgggc |
202 |
Q |
| |
|
|| |||||||| || ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||| ||| |
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|
| T |
2245458 |
aactaaagaactaaactttccaatggatactggcagtgtaccatagaaacctgtctggccaagtagtaaataggtgagtgaactagattgaaactcaggc |
2245359 |
T |
|
| Q |
203 |
aaactaccattgagatttggattatatctcaaatctagaactttcaagtttg |
254 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||| |||| || |||||||| |
|
|
| T |
2245358 |
aaactaccattgagatttgaattatatcccaaatccagaagttccaagtttg |
2245307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 34 - 254
Target Start/End: Original strand, 2098977 - 2099197
Alignment:
| Q |
34 |
gagttgtgtgaggtttccaagcgaagaaggaatatatccaaagaaatggcaatctggaattgatagggaaattaaagaacgaagcttcccaatggatact |
133 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||| |
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|
| T |
2098977 |
gagttgtgtgaggttgccaagcgaagaaggaatatatccaaaaaaatggcaatctgaaattgatagaagaattaaagaactaagcttcccaatggatact |
2099076 |
T |
|
| Q |
134 |
ggcagtgtaccatagaaacctgtctggtcaagtagtaaattggagagtgaactagattgaaactcgggcaaactaccattgagatttggattatatctca |
233 |
Q |
| |
|
||||||||||||||||||||||| || |||||| ||| ||| |||||||||||| |||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
2099077 |
ggcagtgtaccatagaaacctgtttgatcaagtcctaacctggtgagtgaactagactgaaactcaggcaaacttccattgagatttggattatatctca |
2099176 |
T |
|
| Q |
234 |
aatctagaactttcaagtttg |
254 |
Q |
| |
|
|||| |||| || |||||||| |
|
|
| T |
2099177 |
aatccagaagttccaagtttg |
2099197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 3 - 254
Target Start/End: Original strand, 2066134 - 2066385
Alignment:
| Q |
3 |
taaatttgttatttttaaggcttatctgaacgagttgtgtgaggtttccaagcgaagaaggaatatatccaaagaaatggcaatctggaattgataggga |
102 |
Q |
| |
|
|||||||||||||| ||||| |||| | ||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
2066134 |
taaatttgttatttctaaggtatatccccatgagttgtgtgaggttgccaagtgaagaaggaatatatccaaaaaaatggcaatctggaattgttagaat |
2066233 |
T |
|
| Q |
103 |
aattaaagaacgaagcttcccaatggatactggcagtgtaccatagaaacctgtctggtcaagtagtaaattggagagtgaactagattgaaactcgggc |
202 |
Q |
| |
|
|| |||||||| |||||| ||||| |||||||||||||||||| ||||||||||||| |||||| ||| |||| |||||||||||||||||||||||| |
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|
| T |
2066234 |
aactaaagaactaagctttccaatagatactggcagtgtaccagagaaacctgtctgatcaagtgctaacttggtgagtgaactagattgaaactcggga |
2066333 |
T |
|
| Q |
203 |
aaactaccattgagatttggattatatctcaaatctagaactttcaagtttg |
254 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||| ||| || |||||||| |
|
|
| T |
2066334 |
aaactaccattgagatttagattaaatctcaaatccagatattccaagtttg |
2066385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 3 - 254
Target Start/End: Original strand, 2135581 - 2135832
Alignment:
| Q |
3 |
taaatttgttatttttaaggcttatctgaacgagttgtgtgaggtttccaagcgaagaaggaatatatccaaagaaatggcaatctggaattgataggga |
102 |
Q |
| |
|
|||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||| |
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|
| T |
2135581 |
taaatttgttatttttgaggcttatctgctcaagttgtgtgaggtttccaagcgaagaaggaataaatccaaagaaacggcaatctggaattcctaggac |
2135680 |
T |
|
| Q |
103 |
aattaaagaacgaagcttcccaatggatactggcagtgtaccatagaaacctgtctggtcaagtagtaaattggagagtgaactagattgaaactcgggc |
202 |
Q |
| |
|
||||||||||| || ||| |||||||||||||| ||||||||| ||||||||||| ||||| ||| | | |||||||||||| | |||||| ||| |
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|
| T |
2135681 |
aattaaagaactaacctttccaatggatactggtagtgtaccagagaaacctgtcccaccaagtgctaattcagtgagtgaactagactcaaactcaggc |
2135780 |
T |
|
| Q |
203 |
aaactaccattgagatttggattatatctcaaatctagaactttcaagtttg |
254 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
2135781 |
aatctaccattgagatttggattatatctcaaatctagaagttccaagtttg |
2135832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 3 - 254
Target Start/End: Original strand, 2073241 - 2073492
Alignment:
| Q |
3 |
taaatttgttatttttaaggcttatctgaacgagttgtgtgaggtttccaagcgaagaaggaatatatccaaagaaatggcaatctggaattgataggga |
102 |
Q |
| |
|
|||||||||||||| ||||| |||||| | ||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||| ||| | |
|
|
| T |
2073241 |
taaatttgttatttctaaggtctatctgcatgagttgtgtgaggttgccaagtgaagaaggaatatatccaaaaaaatggcaatctggaattgttagagt |
2073340 |
T |
|
| Q |
103 |
aattaaagaacgaagcttcccaatggatactggcagtgtaccatagaaacctgtctggtcaagtagtaaattggagagtgaactagattgaaactcgggc |
202 |
Q |
| |
|
| ||||||| |||||| ||||| || ||||||||||||||| ||||||||||||| |||||| ||| |||| |||||||||||| |||||||| || |
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|
| T |
2073341 |
atctaaagaagtaagctttccaatagacactggcagtgtaccagagaaacctgtctgatcaagtcctaacttggtgagtgaactagactgaaactcaggt |
2073440 |
T |
|
| Q |
203 |
aaactaccattgagatttggattatatctcaaatctagaactttcaagtttg |
254 |
Q |
| |
|
||||| || ||||||||||||||| |||||||||| ||||||| |||||||| |
|
|
| T |
2073441 |
aaacttcctttgagatttggattagatctcaaatccagaacttccaagtttg |
2073492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 34 - 254
Target Start/End: Original strand, 2114368 - 2114588
Alignment:
| Q |
34 |
gagttgtgtgaggtttccaagcgaagaaggaatatatccaaagaaatggcaatctggaattgatagggaaattaaagaacgaagcttcccaatggatact |
133 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||| | |||||||||| ||||| ||||||| ||| ||||||| ||| || | |||||||||| |
|
|
| T |
2114368 |
gagttgtgtgaggtttccaattgaagaaggaatatacccagaaaaatggcaatgtggaactgataggataatcaaagaactaagatttcgaatggatact |
2114467 |
T |
|
| Q |
134 |
ggcagtgtaccatagaaacctgtctggtcaagtagtaaattggagagtgaactagattgaaactcgggcaaactaccattgagatttggattatatctca |
233 |
Q |
| |
|
|| ||||| |||||||||||||| | |||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
2114468 |
gggagtgtgccatagaaacctgttttgtcaagtagtaagttggtgagtgaactagattgaaactcaggcaaactaccattgagatttggattatatccca |
2114567 |
T |
|
| Q |
234 |
aatctagaactttcaagtttg |
254 |
Q |
| |
|
|||| | || ||||||||||| |
|
|
| T |
2114568 |
aatccaaaattttcaagtttg |
2114588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 2056836 - 2057089
Alignment:
| Q |
1 |
cttaaatttgttatttttaaggcttatctgaacgagttgtgtgaggtttccaagcgaagaaggaatatatccaaagaaatggcaatctggaattgatagg |
100 |
Q |
| |
|
|||||||||||||||| ||||| |||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||| |||| |
|
|
| T |
2056836 |
cttaaatttgttatttctaaggaatatcgccttgagttgtgtgaggtttccaagtgaagaaggaatatatccaaaaaaatggcaatctcgaatttttagg |
2056935 |
T |
|
| Q |
101 |
gaaattaaagaacgaagcttcccaatggatactggcagtgtaccatagaaacctgtctggtcaagtagtaaattggagagtgaactagattgaaactcgg |
200 |
Q |
| |
|
||||||||||| |||||| ||||||||||| ||||||| |||||||||||| || | ||||||||||| | || |||||||||||||||||| | | |
|
|
| T |
2056936 |
acaattaaagaactaagctttccaatggatacaggcagtgcaccatagaaacccgtatcatcaagtagtaactgggtgagtgaactagattgaaaattag |
2057035 |
T |
|
| Q |
201 |
gcaaactaccattgagatttggattatatctcaaatctagaactttcaagtttg |
254 |
Q |
| |
|
| |||||||||||||||||| ||||||||| |||||| |||| || |||||||| |
|
|
| T |
2057036 |
gaaaactaccattgagattttgattatatcccaaatccagaagttccaagtttg |
2057089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 34 - 254
Target Start/End: Original strand, 2126258 - 2126478
Alignment:
| Q |
34 |
gagttgtgtgaggtttccaagcgaagaaggaatatatccaaagaaatggcaatctggaattgatagggaaattaaagaacgaagcttcccaatggatact |
133 |
Q |
| |
|
||||||||||||||| ||||| |||| |||||||| |||||| |||||||| |||||||||||||| || ||||||| |||||| |||||||||||| |
|
|
| T |
2126258 |
gagttgtgtgaggttgccaagtgaagtaggaatatttccaaaaaaatggcattctggaattgatagaataactaaagaattaagctttccaatggatact |
2126357 |
T |
|
| Q |
134 |
ggcagtgtaccatagaaacctgtctggtcaagtagtaaattggagagtgaactagattgaaactcgggcaaactaccattgagatttggattatatctca |
233 |
Q |
| |
|
||||||| |||| |||||||||| || |||||| ||| ||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2126358 |
ggcagtgcaccagagaaacctgtatgatcaagtgctaacctggtgagtgaactagactgaaactcaggcaaactaccattgagatttggattatatctca |
2126457 |
T |
|
| Q |
234 |
aatctagaactttcaagtttg |
254 |
Q |
| |
|
|||| |||| || |||||||| |
|
|
| T |
2126458 |
aatccagaagttccaagtttg |
2126478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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