View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13002_low_12 (Length: 235)
Name: NF13002_low_12
Description: NF13002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13002_low_12 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 8216987 - 8216765
Alignment:
| Q |
13 |
aatattggccgagttttgcctcttcgtggtgaaagggtcttttgtctctagaggatatggttggagttgattgattcagtagggaggtggctaggaaaat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8216987 |
aatattggccgagttttgcctcttcgtggtgaaagggtcttttgtctctagaggatatggttggagttgattggttcagtagggaggtggctaggaaaat |
8216888 |
T |
|
| Q |
113 |
cggaaatgggagaaactcgagtttttggaatgatgcttggagggataccattccattaagtattaaattccctagactttactccatttctaataatcaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8216887 |
cggaaatgggagaaactcgagtttttggaatgatgcttggagggataccattccattaagtattaaattccctagactttactccatttctaataatcaa |
8216788 |
T |
|
| Q |
213 |
gaagcaaaggtgagtgagttgtg |
235 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
8216787 |
gaagcaaaggtgagtgagttgtg |
8216765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University