View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13002_low_3 (Length: 506)

Name: NF13002_low_3
Description: NF13002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13002_low_3
NF13002_low_3
[»] chr7 (6 HSPs)
chr7 (11-395)||(42029828-42030212)
chr7 (425-491)||(42030237-42030303)
chr7 (53-126)||(10325121-10325194)
chr7 (157-230)||(712131-712204)
chr7 (60-100)||(717501-717541)
chr7 (46-98)||(40901853-40901905)
[»] chr1 (3 HSPs)
chr1 (46-148)||(51080720-51080822)
chr1 (46-98)||(2536530-2536582)
chr1 (46-98)||(11351645-11351697)
[»] chr2 (2 HSPs)
chr2 (46-148)||(40287065-40287167)
chr2 (46-98)||(29894369-29894421)
[»] chr3 (3 HSPs)
chr3 (53-109)||(38998907-38998963)
chr3 (53-100)||(27265807-27265854)
chr3 (46-98)||(36684916-36684968)
[»] chr6 (3 HSPs)
chr6 (53-100)||(13757556-13757603)
chr6 (53-100)||(19047096-19047143)
chr6 (46-98)||(942704-942756)
[»] chr5 (2 HSPs)
chr5 (46-100)||(14856970-14857024)
chr5 (64-148)||(32163040-32163124)
[»] chr8 (2 HSPs)
chr8 (56-101)||(14541224-14541269)
chr8 (57-149)||(11911423-11911515)
[»] chr4 (2 HSPs)
chr4 (57-100)||(2087389-2087432)
chr4 (46-98)||(1394136-1394188)
[»] scaffold0041 (1 HSPs)
scaffold0041 (46-98)||(48113-48165)


Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 11 - 395
Target Start/End: Original strand, 42029828 - 42030212
Alignment:
Q  11 atcatcataaaaaattatatgggactagctgtatcaattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtttttgaaactatt 110  Q
    |||||||| ||| ||||||| |||||| | |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  42029828 atcatcatcaaacattatataggactaaccgtatcaattcacgagcgaccccattaatttgcctcatattaaattcaacatgagagtttttgaaactatt 42029927  T
Q  111 aaggaacatttgtctatatgcagaaataatacaaccaaatgagtctacaacattcttaaagtcgagagcaaaatccaaattataaagttgaaggtctaat 210  Q
    | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42029928 atggaacatctgtctatatgcagaaataatacaaccaaatgagtctacaacattcttaaagtcgagagcaaaatccaaattataaagttgaaggtctaat 42030027  T
Q  211 gttcatttcaaagtcgtatgcaaaccaaatgcttccgttatttcatcatcacatacacagaggagaaaaccaagtatctcaattcctactatgttaagtg 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  42030028 gttcatttcaaagtcgtatgcaaaccaaatgcttccgttatttcatcatcacatacatagaggagaaaaccaagtatctcaattcctactatgttaagtg 42030127  T
Q  311 aaaaagaaaatgacttataacgtccgattgctggcttttctcatgacaaacaatgcatacatacctattgtccaccagaatgcaa 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42030128 aaaaagaaaatgacttataacgtccgattgctggcttttctcatgacaaccaatgcatacatacctattgtccaccagaatgcaa 42030212  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 425 - 491
Target Start/End: Original strand, 42030237 - 42030303
Alignment:
Q  425 taggttctaaaataaattacacagtacataaaaattgatctcacgccacttaaaccaacccccttgt 491  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42030237 tagggtctaaaataaattacacagtacataaaaattgatctcacgccacttaacccaacccccttgt 42030303  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 10325121 - 10325194
Alignment:
Q  53 gagcgaccccattagtttgcctcatattaaactcaacatgagagtttttgaaactattaaggaacatttgtcta 126  Q
    |||||||| |||| ||||||||| |||||||||| ||||||||||| || |||| |||||| |||| |||||||    
T  10325121 gagcgacctcattcgtttgcctcctattaaactcgacatgagagttgtttaaacaattaagtaacaattgtcta 10325194  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 712204 - 712131
Alignment:
Q  157 acaacattcttaaagtcgagagcaaaatccaaattataaagttgaaggtctaatgttcatttcaaagtcgtatg 230  Q
    ||||| |||||| |||| ||||||||||| | ||||| || |||||||| | |||| |||| ||||||||||||    
T  712204 acaaccttcttagagtctagagcaaaatctacattatcaaattgaaggtatgatgtccattccaaagtcgtatg 712131  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 717541 - 717501
Alignment:
Q  60 cccattagtttgcctcatattaaactcaacatgagagtttt 100  Q
    |||||||| ||| ||| ||||||||||||||||||||||||    
T  717541 cccattagcttgtctcctattaaactcaacatgagagtttt 717501  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 40901853 - 40901905
Alignment:
Q  46 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 98  Q
    |||||| ||||||||  ||||||||||||| |||| ||||| |||||||||||    
T  40901853 aattcatgagcgaccatattagtttgcctcctattcaactcgacatgagagtt 40901905  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 46 - 148
Target Start/End: Original strand, 51080720 - 51080822
Alignment:
Q  46 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtttttgaaactattaaggaacatttgtctatatgcagaaataatacaac 145  Q
    |||||| ||||||||||||||| ||||||| |||||||||| |||||||||||||  |||||||   | ||||  |||||| |||||| |||||||||||    
T  51080720 aattcatgagcgaccccattagattgcctcctattaaactcgacatgagagttttgaaaactatcctgaaacaactgtctacatgcagtaataatacaac 51080819  T
Q  146 caa 148  Q
    |||    
T  51080820 caa 51080822  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 2536530 - 2536582
Alignment:
Q  46 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 98  Q
    |||||| ||||||||||||| | ||||||| |||| ||||| |||||||||||    
T  2536530 aattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagtt 2536582  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 11351645 - 11351697
Alignment:
Q  46 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 98  Q
    |||||| ||||||||||||| | ||||||| |||| ||||| |||||||||||    
T  11351645 aattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagtt 11351697  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 148
Target Start/End: Original strand, 40287065 - 40287167
Alignment:
Q  46 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtttttgaaactattaaggaacatttgtctatatgcagaaataatacaac 145  Q
    |||||| ||| ||||||||||| |||||||||||||||||  |||||||||||||  |||||||   | ||||  |||||| |||||| |||||||||||    
T  40287065 aattcatgagtgaccccattagcttgcctcatattaaacttgacatgagagttttgaaaactatcctgaaacaactgtctacatgcagtaataatacaac 40287164  T
Q  146 caa 148  Q
    |||    
T  40287165 caa 40287167  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 29894369 - 29894421
Alignment:
Q  46 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 98  Q
    |||||| ||||||||||||| | ||||||| |||| ||||| |||||||||||    
T  29894369 aattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagtt 29894421  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 38998963 - 38998907
Alignment:
Q  53 gagcgaccccattagtttgcctcatattaaactcaacatgagagtttttgaaactat 109  Q
    ||||||||||||||| ||||||| |||||||||| |||||||||||||  |||||||    
T  38998963 gagcgaccccattagcttgcctcctattaaactcgacatgagagttttgaaaactat 38998907  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 27265854 - 27265807
Alignment:
Q  53 gagcgaccccattagtttgcctcatattaaactcaacatgagagtttt 100  Q
    |||||||| |||||||||| ||| ||||||||||||||||||||||||    
T  27265854 gagcgacctcattagtttgtctcttattaaactcaacatgagagtttt 27265807  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 36684968 - 36684916
Alignment:
Q  46 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 98  Q
    |||||| ||||||||||||||| ||||||| |||| ||||| |||||||||||    
T  36684968 aattcatgagcgaccccattagcttgcctcctattgaactcgacatgagagtt 36684916  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 13757556 - 13757603
Alignment:
Q  53 gagcgaccccattagtttgcctcatattaaactcaacatgagagtttt 100  Q
    |||||||| ||||||||||| || ||||||||||||||||||||||||    
T  13757556 gagcgacctcattagtttgcttcttattaaactcaacatgagagtttt 13757603  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 19047143 - 19047096
Alignment:
Q  53 gagcgaccccattagtttgcctcatattaaactcaacatgagagtttt 100  Q
    |||||||| |||||| ||||||| |||||||||| |||||||||||||    
T  19047143 gagcgaccacattagcttgcctcctattaaactcgacatgagagtttt 19047096  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 942756 - 942704
Alignment:
Q  46 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 98  Q
    |||||||||||||||||||| | ||||||| |||| ||||| |||| ||||||    
T  942756 aattcacgagcgaccccattggcttgcctcctattgaactcgacattagagtt 942704  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 14856970 - 14857024
Alignment:
Q  46 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtttt 100  Q
    |||||| |||||| | |||| |||||||||||||||||||| |||||||||||||    
T  14856970 aattcatgagcgatcacatttgtttgcctcatattaaactcgacatgagagtttt 14857024  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 148
Target Start/End: Complemental strand, 32163124 - 32163040
Alignment:
Q  64 ttagtttgcctcatattaaactcaacatgagagtttttgaaactattaaggaacatttgtctatatgcagaaataatacaaccaa 148  Q
    |||||||||||| |||||||||| | |||||||||||  |||||||   | ||||  |||||| | |||| ||||||||||||||    
T  32163124 ttagtttgcctcctattaaactcgatatgagagttttgaaaactatcctgaaacaactgtctacaggcagtaataatacaaccaa 32163040  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 14541269 - 14541224
Alignment:
Q  56 cgaccccattagtttgcctcatattaaactcaacatgagagttttt 101  Q
    ||||| ||||||||||||||||||||||||||| | ||||||||||    
T  14541269 cgaccacattagtttgcctcatattaaactcaatacgagagttttt 14541224  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 149
Target Start/End: Original strand, 11911423 - 11911515
Alignment:
Q  57 gaccccattagtttgcctcatattaaactcaacatgagagtttttgaaactattaaggaacatttgtctatatgcagaaataatacaaccaaa 149  Q
    ||||||||| |||| |||| |||| ||||| |||||||||||||  ||||||||||  |||  ||||||| || || | || |||||||||||    
T  11911423 gaccccattcgtttacctcctattgaactcgacatgagagttttgaaaactattaattaactattgtctacatacaaatatgatacaaccaaa 11911515  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 100
Target Start/End: Original strand, 2087389 - 2087432
Alignment:
Q  57 gaccccattagtttgcctcatattaaactcaacatgagagtttt 100  Q
    ||||||||||||||||||| ||||||| | ||||||||||||||    
T  2087389 gaccccattagtttgcctcgtattaaatttaacatgagagtttt 2087432  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 1394188 - 1394136
Alignment:
Q  46 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 98  Q
    |||||| || |||||||||||| ||||||| |||| ||||| |||||||||||    
T  1394188 aattcatgaacgaccccattagcttgcctcctattgaactcgacatgagagtt 1394136  T

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Target: scaffold0041 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 48165 - 48113
Alignment:
Q  46 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 98  Q
    |||||| ||||||||  ||||||||||||| |||| ||||| |||||||||||    
T  48165 aattcatgagcgaccatattagtttgcctcctattcaactcgacatgagagtt 48113  T

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