View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13002_low_4 (Length: 465)
Name: NF13002_low_4
Description: NF13002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13002_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 437; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 38606000 - 38606448
Alignment:
| Q |
1 |
caagggattcgagaacaggggtagtgattaggcacttataatttttccaaacccaccttatgaacaagataaggttgtgaggtgatacctttggggtttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38606000 |
caagggattcgagaacaggggtagtgattaggcacttataatttttccaaacccaccttatgaacaagataaggttgtgaggtgatacctttggggtttg |
38606099 |
T |
|
| Q |
101 |
aactaatttggtttgacaagaggtttgaataactttgagtgcaaattgttgctgttgttcaagtgtgagattggttaggtcaagggaattaagatctgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38606100 |
aactaatttggtttgacaagaggtttgaataactttgagtgcaaattgttgctgttgttcaagtgtgagattggttaggtcaagggaattaagatctgaa |
38606199 |
T |
|
| Q |
201 |
tgaatttggtagccatggccatgcggaggagcattactaagaagactcatcactttatggaaatcactggaagcagtgacgtcgtggccacaaggagaaa |
300 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38606200 |
tgaatttggtagccatggccatggggaggagcattactaagaagactcatcactttatggaaatcactggaagcagtgacgtcgtggtcacaaggagaaa |
38606299 |
T |
|
| Q |
301 |
catatgaaaacaacctgggatgaagaattctgtgtaaggatgaacaagaattgaaagaattgatgtagatcctcccctgtctcgctgcaaatgacatcaa |
400 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
38606300 |
catatgaaaacaacctgggatgaagaattctgtgtaaggatgaacaagaattgaaagaattgatgtagaccctcccctgtctcgctgcaaatgacatcaa |
38606399 |
T |
|
| Q |
401 |
cctctgctgtatcatctcctttaaataaattatcaacctctgatgaagt |
449 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38606400 |
cctctgctgtatcatctcctttaaataaattatcaacctctgatgaagt |
38606448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 40180938 - 40180982
Alignment:
| Q |
96 |
gtttgaactaatttggtttgacaagaggtttgaataactttgagt |
140 |
Q |
| |
|
|||| ||| ||||| |||||||||||||||| ||||||||||||| |
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|
| T |
40180938 |
gtttcaacaaatttagtttgacaagaggttttaataactttgagt |
40180982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 41885653 - 41885617
Alignment:
| Q |
90 |
tttggggtttgaactaatttggtttgacaagaggttt |
126 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||| |
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|
| T |
41885653 |
tttggggtttgaactaatttaatttgacaagaggttt |
41885617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 44459406 - 44459144
Alignment:
| Q |
1 |
caagggattcgagaacaggggtagtgattaggcacttataatttttccaaacccaccttatgaacaagataaggttgtgaggtgatacctttggggtttg |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||| ||| | ||| ||||||||| || |||| || |||||| || |||||| |||||||||| || |
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|
| T |
44459406 |
caagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattatgaggttgaacctttggggcttc |
44459307 |
T |
|
| Q |
101 |
aactaatttggtttgacaagaggtttgaataactttgagtgcaaattgttgctgttgttcaagtgtgagattggttaggtcaagggaattaagatctgaa |
200 |
Q |
| |
|
||| ||||| |||||||||||||||| ||||||||| |||||||| ||| ||||||| | || ||| | || | | || ||||||||||||||| |
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|
| T |
44459306 |
aacaaatttagtttgacaagaggtttcaataactttaagtgcaaagtgt---tgttgttgatgttgtagagtagtgaattgaattgaattaagatctgaa |
44459210 |
T |
|
| Q |
201 |
tgaatttggtagccatggccatgcggaggagcattactaagaagactcatcactttatggaaatca |
266 |
Q |
| |
|
| |||||||| |||| | | | |||| ||| ||||||||||||||||||||||| ||||||||| |
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|
| T |
44459209 |
taaatttggtggccacgctcgttaggagcagcgttactaagaagactcatcactttctggaaatca |
44459144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 44466939 - 44466677
Alignment:
| Q |
1 |
caagggattcgagaacaggggtagtgattaggcacttataatttttccaaacccaccttatgaacaagataaggttgtgaggtgatacctttggggtttg |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||| ||| | ||| ||||||||| || |||| || |||||| || |||||| |||||||||| || |
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|
| T |
44466939 |
caagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattatgaggttgaacctttggggcttc |
44466840 |
T |
|
| Q |
101 |
aactaatttggtttgacaagaggtttgaataactttgagtgcaaattgttgctgttgttcaagtgtgagattggttaggtcaagggaattaagatctgaa |
200 |
Q |
| |
|
||| ||||| |||||||||||||||| ||||||||| |||||||| ||| ||||||| | || ||| | || | | || ||||||||||||||| |
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|
| T |
44466839 |
aacaaatttagtttgacaagaggtttcaataactttaagtgcaaagtgt---tgttgttgatgttgtagagtagtgaattgaattgaattaagatctgaa |
44466743 |
T |
|
| Q |
201 |
tgaatttggtagccatggccatgcggaggagcattactaagaagactcatcactttatggaaatca |
266 |
Q |
| |
|
| |||||||| |||| | | | |||| ||| ||||||||||||||||||||||| ||||||||| |
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|
| T |
44466742 |
taaatttggtggccacgctcgttaggagcagcgttactaagaagactcatcactttctggaaatca |
44466677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 145
Target Start/End: Original strand, 34502618 - 34502695
Alignment:
| Q |
68 |
gataaggttgtgaggtgatacctttggggtttgaactaatttggtttgacaagaggtttgaataactttgagtgcaaa |
145 |
Q |
| |
|
|||||| || ||||| || ||||||||||||| | |||||| |||||| |||||| || ||||||||||||| |||| |
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| T |
34502618 |
gataagattatgaggcgaaacctttggggtttcagttaatttagtttgagaagaggcttcaataactttgagtacaaa |
34502695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 145
Target Start/End: Complemental strand, 44460032 - 44459955
Alignment:
| Q |
68 |
gataaggttgtgaggtgatacctttggggtttgaactaatttggtttgacaagaggtttgaataactttgagtgcaaa |
145 |
Q |
| |
|
|||||| || ||||| || ||||||||||||| || |||||| ||||| | ||||||| ||||||||||||| |||| |
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|
| T |
44460032 |
gataagattatgaggcgaaacctttggggtttcaattaatttagtttgtgaggaggtttcaataactttgagtacaaa |
44459955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 145
Target Start/End: Complemental strand, 44467565 - 44467488
Alignment:
| Q |
68 |
gataaggttgtgaggtgatacctttggggtttgaactaatttggtttgacaagaggtttgaataactttgagtgcaaa |
145 |
Q |
| |
|
|||||| || ||||| || ||||||||||||| || |||||| ||||| | ||||||| ||||||||||||| |||| |
|
|
| T |
44467565 |
gataagattatgaggcgaaacctttggggtttcaattaatttagtttgtgaggaggtttcaataactttgagtacaaa |
44467488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 126 - 261
Target Start/End: Complemental strand, 410322 - 410187
Alignment:
| Q |
126 |
tgaataactttgagtgcaaattgttgctg---ttgttcaagtgtgagattggttaggtcaagggaattaagatctgaatgaatttggtagccatggccat |
222 |
Q |
| |
|
|||||||||||||||| ||| ||||| || ||||| |||| ||| |||||| |||||||| |||||||| || || ||||||||||||||||||| |
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|
| T |
410322 |
tgaataactttgagtggaaagtgttgttgattttgttgaagt---agagtggttaagtcaagggcattaagatgtgcataaatttggtagccatggccac |
410226 |
T |
|
| Q |
223 |
gcggaggagcattactaagaagactcatcactttatgga |
261 |
Q |
| |
|
| ||||||||||| ||||||| |||||||||||| |||| |
|
|
| T |
410225 |
ggggaggagcattgctaagaatactcatcactttctgga |
410187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 46358977 - 46358827
Alignment:
| Q |
1 |
caagggattcgagaacaggggtagtgattaggcacttataatttttccaaacccaccttatgaacaagataaggttgtgaggtgatacctttggggtttg |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||| ||| | ||| ||||||||| || |||| || |||||| || |||||| |||||||||| || |
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|
| T |
46358977 |
caagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattatgaggttgaacctttggggcttc |
46358878 |
T |
|
| Q |
101 |
aactaatttggtttgacaagaggtttgaataactttgagtgcaaattgttg |
151 |
Q |
| |
|
||| ||||| |||||||||||||||| ||||||||| |||||||| ||||| |
|
|
| T |
46358877 |
aacaaatttagtttgacaagaggtttcaataactttaagtgcaaagtgttg |
46358827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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