View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13002_low_9 (Length: 305)
Name: NF13002_low_9
Description: NF13002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13002_low_9 |
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| [»] chr7 (11 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 10 - 305
Target Start/End: Complemental strand, 2692176 - 2691881
Alignment:
| Q |
10 |
aacaatattgcacgaagccaattgtaagacttgaattcgagaatcggtcgagagagaagaactttgtccaatgtacaatgacagtttgttgaatgataaa |
109 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2692176 |
aacaaaattgcatgaagccaattgtaagacttgaattcgagaatcggtcataagggaagaactttgtccagtgtacaatgacagtttgttgaatgataaa |
2692077 |
T |
|
| Q |
110 |
ttaagaaaaactagttttttgagcttcagaaacgtgtctaggtttatctttccatgcaaacaattagagcgtaggttcaagccaactaaatttgttaggt |
209 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2692076 |
ttaagaaaaactagctttttgagcttcaaaaatgtgtctaggtttatcttttcatgcaaacaattagagcgtaggttcaagccaactaaatttgttaggt |
2691977 |
T |
|
| Q |
210 |
tcattatccaagaaggaacttcaccctttatattgctatttcttgcaattaatacttctagtttagtaagatttgcaaaagataatgggatgtcac |
305 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2691976 |
tcattatccaagaaggaatttctccctttatattgctatttcttgcaattaatacttctagtttagtgagatttgcaaaagataatgggatgtcac |
2691881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 2098509 - 2098798
Alignment:
| Q |
16 |
attgcacgaagccaattgtaagacttgaattcgagaatcggtcgagagagaagaactttgtccaatgtacaatgacagtttgttgaatgataaattaaga |
115 |
Q |
| |
|
|||||| ||| |||||| |||| ||||||||||||||||||| | ||||| |||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
2098509 |
attgcatgaatccaattctaagctttgaattcgagaatcggtcatatgggaagacctttttccactgtacaatgacagtttgttgaatgataaattaaga |
2098608 |
T |
|
| Q |
116 |
aaaactagttttttgagcttcagaaacgtgtctaggtttatctttccatgcaaacaattagagcgtaggttcaagccaactaaatttgttaggttcatta |
215 |
Q |
| |
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| | |||| |||||||| |||||||||||||| || | || ||||||||||||| ||||| || |||||| |||| |||||||||||||||||||||| | |
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| T |
2098609 |
acagctagctttttgagtttcagaaacgtgtcaagctctagctttccatgcaaagaattaaagggtaggtccaagacaactaaatttgttaggttcataa |
2098708 |
T |
|
| Q |
216 |
tccaagaaggaacttcaccctttatattgctatttcttgcaattaatacttctagtttagtaagatttgcaaaagataatgggatgtcac |
305 |
Q |
| |
|
||||||| || | |||||||||||||||||||||| |||| |||| | | |||| | ||| ||||||||||||||||||||||| |||| |
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|
| T |
2098709 |
tccaagatggtatttcaccctttatattgctattttctgcacttaaaagtactagctgagtgagatttgcaaaagataatgggatctcac |
2098798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 2125790 - 2126079
Alignment:
| Q |
16 |
attgcacgaagccaattgtaagacttgaattcgagaatcggtcgagagagaagaactttgtccaatgtacaatgacagtttgttgaatgataaattaaga |
115 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| ||||||||||| | |||||||||| |||| | |||||||||| ||||||||||||||||| ||| |
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|
| T |
2125790 |
attgcatgaagccaattgtaagactcgaatttgagaatcggtcctatgggaagaactttttccactatacaatgacaatttgttgaatgataaatctaga |
2125889 |
T |
|
| Q |
116 |
aaaactagttttttgagcttcagaaacgtgtctaggtttatctttccatgcaaacaattagagcgtaggttcaagccaactaaatttgttaggttcatta |
215 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||| || | || ||||||||||||| |||||||||||||| ||||| | ||||||||| ||| ||||||| |
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| T |
2125890 |
aaaactagctttttgaggttcagaaatgtgtcaagctctagctttccatgcaaaaaattagagcgtaggctcaagtaagctaaatttgctagattcatta |
2125989 |
T |
|
| Q |
216 |
tccaagaaggaacttcaccctttatattgctatttcttgcaattaatacttctagtttagtaagatttgcaaaagataatgggatgtcac |
305 |
Q |
| |
|
|||| || |||| |||||||||||||||||||||| ||||| || | |||||||| || |||||||||||||||||||||||||||| |
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|
| T |
2125990 |
tccatgatggaatttcaccctttatattgctatttgttgcacctagaagttctagttgggtgagatttgcaaaagataatgggatgtcac |
2126079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 2138393 - 2138682
Alignment:
| Q |
16 |
attgcacgaagccaattgtaagacttgaattcgagaatcggtcgagagagaagaactttgtccaatgtacaatgacagtttgttgaatgataaattaaga |
115 |
Q |
| |
|
|||||| ||| |||||||||||| ||||||| ||||||| ||| | |||||||||| ||| | |||||||||||||||||||||| |||||| ||| |
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|
| T |
2138393 |
attgcatgaatccaattgtaagatttgaatttgagaatcagtcctatgggaagaactttttccgctatacaatgacagtttgttgaatgctaaatttaga |
2138492 |
T |
|
| Q |
116 |
aaaactagttttttgagcttcagaaacgtgtctaggtttatctttccatgcaaacaattagagcgtaggttcaagccaactaaatttgttaggttcatta |
215 |
Q |
| |
|
|||| ||| ||||| ||||||||||| ||||| || | || ||||||||||||| ||||| ||| |||||||||| |||||||||||||||||||||||| |
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| T |
2138493 |
aaaagtagctttttaagcttcagaaatgtgtcaagctctagctttccatgcaaagaattaaagcctaggttcaagacaactaaatttgttaggttcatta |
2138592 |
T |
|
| Q |
216 |
tccaagaaggaacttcaccctttatattgctatttcttgcaattaatacttctagtttagtaagatttgcaaaagataatgggatgtcac |
305 |
Q |
| |
|
||||||| |||| ||||||||| |||||||||||| ||||| |||| | || ||| | || |||||||||||||||||||| ||||||| |
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|
| T |
2138593 |
tccaagacggaatttcacccttaatattgctattttttgcacttaaaaattgtagctgggtgagatttgcaaaagataatggaatgtcac |
2138682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 10 - 297
Target Start/End: Original strand, 2072799 - 2073086
Alignment:
| Q |
10 |
aacaatattgcacgaagccaattgtaagacttgaattcgagaatcggtcgagagagaagaactttgtccaatgtacaatgacagtttgttgaatgataaa |
109 |
Q |
| |
|
||||| |||||| ||||||||| |||| |||||||| ||||||| ||| |||| ||||||| |||| | ||||||||||||||||| ||||||||| |
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|
| T |
2072799 |
aacaaaattgcatgaagccaatcgtaaatcttgaattagagaatcagtcatacgagatgaactttttccactatacaatgacagtttgttaaatgataaa |
2072898 |
T |
|
| Q |
110 |
ttaagaaaaactagttttttgagcttcagaaacgtgtctaggtttatctttccatgcaaacaattagagcgtaggttcaagccaactaaatttgttaggt |
209 |
Q |
| |
|
| |||||| ||||| |||||||| ||||||||| |||||| | || ||||||||||||| ||||| || ||||||||||| |||||||||||||||||| |
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|
| T |
2072899 |
tcaagaaagactagctttttgaggttcagaaacttgtctaactctagctttccatgcaaagaattaaagggtaggttcaagacaactaaatttgttaggt |
2072998 |
T |
|
| Q |
210 |
tcattatccaagaaggaacttcaccctttatattgctatttcttgcaattaatacttctagtttagtaagatttgcaaaagataatgg |
297 |
Q |
| |
|
|||| |||||||| |||| |||||||||||||||||||||| |||| |||| | | |||| | ||| |||||||||||||||||||| |
|
|
| T |
2072999 |
tcataatccaagatggaatttcaccctttatattgctatttgctgcacttaaaagtactagctgagtgagatttgcaaaagataatgg |
2073086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 67 - 305
Target Start/End: Complemental strand, 2245944 - 2245706
Alignment:
| Q |
67 |
agaactttgtccaatgtacaatgacagtttgttgaatgataaattaagaaaaactagttttttgagcttcagaaacgtgtctaggtttatctttccatgc |
166 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||| |||||| |||| |||||| |||||||||||||||||| |||| || | | |||||||||| |
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|
| T |
2245944 |
agaacttttcccactgtacaatgacagtttgttgaatgctaaattcagaacaactagctttttgagcttcagaaacatgtcaagctcttgctttccatgc |
2245845 |
T |
|
| Q |
167 |
aaacaatta-gagcgtaggttcaagccaactaaatttgttaggttcattatccaagaaggaacttcaccctttatattgctatttcttgcaattaatact |
265 |
Q |
| |
|
||| ||||| ||| |||||||||| ||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||| |||| |||||||| |
|
|
| T |
2245844 |
aaagaattatgag-gtaggttcaaaatgactaaatttgttaggttcattatccaagatggaatttcacccttcatattgctatttgctgcacttaatact |
2245746 |
T |
|
| Q |
266 |
tctagtttagtaagatttgcaaaagataatgggatgtcac |
305 |
Q |
| |
|
||||||| || ||||||||||||| |||||||||||||| |
|
|
| T |
2245745 |
tctagttgggtgagatttgcaaaaggtaatgggatgtcac |
2245706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 84 - 300
Target Start/End: Original strand, 2135237 - 2135453
Alignment:
| Q |
84 |
acaatgacagtttgttgaatgataaattaagaaaaactagttttttgagcttcagaaacgtgtctaggtttatctttccatgcaaacaattagagcgtag |
183 |
Q |
| |
|
|||||||||||||||| |||||||||| | ||||||||| |||||||| |||||||||||||| || | | ||||||||||| | |||||||| |||| |
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|
| T |
2135237 |
acaatgacagtttgttaaatgataaatctaaaaaaactagctttttgagattcagaaacgtgtcaagctcaagctttccatgcagaaaattagagtgtag |
2135336 |
T |
|
| Q |
184 |
gttcaagccaactaaatttgttaggttcattatccaagaaggaacttcaccctttatattgctatttcttgcaattaatacttctagtttagtaagattt |
283 |
Q |
| |
|
||||||| | ||||||| ||||| ||||||| |||||| |||| || ||||||||||| ||||||| ||||| ||||||||||||||| || |||||| |
|
|
| T |
2135337 |
gttcaagtaagctaaattggttagattcattaaccaagatggaatttgaccctttatatagctatttgttgcacttaatacttctagttgcgtgagattt |
2135436 |
T |
|
| Q |
284 |
gcaaaagataatgggat |
300 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
2135437 |
gcgaaagataatgggat |
2135453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 85 - 300
Target Start/End: Original strand, 2056473 - 2056685
Alignment:
| Q |
85 |
caatgacagtttgttgaatgataaattaagaaaaactagttttttgagcttcagaaacgtgtctaggtttatctttccatgcaaacaattagagcgtagg |
184 |
Q |
| |
|
||||||||||||||||||||||||||| |||| | ||| ||||||| ||||| ||| ||||| || | || ||||||||||||| ||||| || |||| |
|
|
| T |
2056473 |
caatgacagtttgttgaatgataaatttagaattattagatttttgaacttcaaaaaagtgtcaagctctagctttccatgcaaaaaattataggctagg |
2056572 |
T |
|
| Q |
185 |
ttcaagccaactaaatttgttaggttcattatccaagaaggaacttcaccctttatattgctatttcttgcaattaatacttctagtttagtaagatttg |
284 |
Q |
| |
|
|||||| | ||||||||||| |||||||||||||||| |||| ||||||| ||||| |||||||||||||||| ||||||||||| || ||||||| |
|
|
| T |
2056573 |
ttcaagatacctaaatttgtttggttcattatccaagatggaatttcacccattatactgctatttcttgcaataaatacttctag---cgtgagatttg |
2056669 |
T |
|
| Q |
285 |
caaaagataatgggat |
300 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
2056670 |
caaaagataatgggat |
2056685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 2113969 - 2114198
Alignment:
| Q |
16 |
attgcacgaagccaattgtaagacttgaattcgagaatcggtcgagagagaagaactttgtccaatgtacaatgacagtttgttgaatgataaattaaga |
115 |
Q |
| |
|
|||||| ||| |||||||||||| |||||| |||||||||||| |||||||||| ||| | |||||||||||||||||||||||||||| ||| |
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|
| T |
2113969 |
attgcatgaatccaattgtaagatttgaatacgagaatcggtcatatttgaagaacttttcccactatacaatgacagtttgttgaatgataaatctaga |
2114068 |
T |
|
| Q |
116 |
aaaactagttttttgagcttcagaaacgtgtctaggtttatctttccatgcaaacaattagagcgtaggttcaagccaactaaatttgttaggttcatta |
215 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||| || | || ||||||||||||| ||||||||||||||||||||| ||||||| | | ||||||| |
|
|
| T |
2114069 |
aaaactagctttctgagcttcagaaacgtgtcaagctctagctttccatgcaaaaaattagagcgtaggttcaagcatgctaaattggaatgattcatta |
2114168 |
T |
|
| Q |
216 |
tccaagaaggaacttcaccctttatattgc |
245 |
Q |
| |
|
|||| || |||| || |||||||||||||| |
|
|
| T |
2114169 |
tccatgatggaatttgaccctttatattgc |
2114198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 63 - 305
Target Start/End: Original strand, 2065744 - 2065986
Alignment:
| Q |
63 |
gagaagaactttgtccaatgtacaatgacagtttgttgaatgataaattaagaaaaactagttttttgagcttcagaaacgtgtctaggtttatctttcc |
162 |
Q |
| |
|
|||| ||||||| |||| | ||||||||||||||||| ||||||||| |||||| |||| |||||||| |||||||| ||||| || | || ||| || |
|
|
| T |
2065744 |
gagatgaactttttccactatacaatgacagtttgttatatgataaatctagaaaacctaggtttttgaggttcagaaatgtgtcaagctctaccttccc |
2065843 |
T |
|
| Q |
163 |
atgcaaacaattagagcgtaggttcaagccaactaaatttgttaggttcattatccaagaaggaacttcaccctttatattgctatttcttgcaattaat |
262 |
Q |
| |
|
||||||| |||||||| |||||||||| ||||||||| | || ||||||||||| | ||| || |||||||||||||| || ||||| ||| |
|
|
| T |
2065844 |
atgcaaaaaattagaggctaggttcaagtaaactaaattggcaagattcattatccatggtagaatttgaccctttatattgcaatcggttgcacctaaa |
2065943 |
T |
|
| Q |
263 |
acttctagtttagtaagatttgcaaaagataatgggatgtcac |
305 |
Q |
| |
|
| || ||| | || ||||||||||||||||||| |||||||| |
|
|
| T |
2065944 |
aattgtagctgggtgagatttgcaaaagataatgagatgtcac |
2065986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 250
Target Start/End: Complemental strand, 1696851 - 1696804
Alignment:
| Q |
203 |
gttaggttcattatccaagaaggaacttcaccctttatattgctattt |
250 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||| ||| |||||||||| |
|
|
| T |
1696851 |
gttaggttcattatccaagatggaatttcaccccttaaattgctattt |
1696804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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