View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13003_high_12 (Length: 206)

Name: NF13003_high_12
Description: NF13003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13003_high_12
NF13003_high_12
[»] chr1 (6 HSPs)
chr1 (16-188)||(14789620-14789792)
chr1 (14-188)||(14880061-14880235)
chr1 (35-188)||(14757128-14757281)
chr1 (14-188)||(14769569-14769743)
chr1 (34-188)||(14874795-14874949)
chr1 (19-95)||(36307158-36307234)
[»] chr8 (1 HSPs)
chr8 (14-188)||(14857482-14857656)
[»] scaffold0042 (1 HSPs)
scaffold0042 (14-188)||(91731-91905)
[»] chr3 (1 HSPs)
chr3 (142-188)||(33003102-33003148)
[»] chr7 (2 HSPs)
chr7 (14-89)||(47240829-47240904)
chr7 (14-89)||(47296289-47296364)
[»] chr4 (1 HSPs)
chr4 (142-188)||(35368810-35368856)


Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 14789620 - 14789792
Alignment:
Q  16 tcaccaaattgttcaagagtaacatcagcatcagcttcaataaacaaaataccttcatcattacaatcaaccataagtttcctactaggaccttccctta 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  14789620 tcaccaaattgttcaagagtaacatcagcatcagcttcaataaacaaaataccttcatcattacaatccaccataagtttcctacttggaccttccctta 14789719  T
Q  116 atctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtcttt 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14789720 atctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtcttt 14789792  T

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Target: chr1; HSP #2
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 14 - 188
Target Start/End: Original strand, 14880061 - 14880235
Alignment:
Q  14 catcaccaaattgttcaagagtaacatcagcatcagcttcaataaacaaaataccttcatcattacaatcaaccataagtttcctactaggaccttccct 113  Q
    |||||||||| | || |||||||||||| |||||||||||||||||||||| ||||||  || | ||||| |||||||||||||||| ||||||||||||    
T  14880061 catcaccaaactctttaagagtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttccct 14880160  T
Q  114 taatctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtcttt 188  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||    
T  14880161 taatctacctgcaaatggataataaaatacaagtgtttttgctaatgcttttctaataacatcaacaggatcttt 14880235  T

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Target: chr1; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 35 - 188
Target Start/End: Complemental strand, 14757281 - 14757128
Alignment:
Q  35 taacatcagcatcagcttcaataaacaaaataccttcatcattacaatcaaccataagtttcctactaggaccttcccttaatctacctgcaaatggata 134  Q
    ||||||| |||||||||||||||||||||| ||||||  || | ||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  14757281 taacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctacccggaccttcccttaatctacctgcaaatggata 14757182  T
Q  135 ataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtcttt 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14757181 ataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtcttt 14757128  T

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Target: chr1; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 14 - 188
Target Start/End: Original strand, 14769569 - 14769743
Alignment:
Q  14 catcaccaaattgttcaagagtaacatcagcatcagcttcaataaacaaaataccttcatcattacaatcaaccataagtttcctactaggaccttccct 113  Q
    |||||||||||| ||  | | ||||||| |||||||||||||||||||||| ||||||  || | ||||| |||||||||||||||| ||||||||||||    
T  14769569 catcaccaaattctttcaaactaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttccct 14769668  T
Q  114 taatctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtcttt 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  14769669 taatctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataaaatcaacaggatcttt 14769743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 34 - 188
Target Start/End: Original strand, 14874795 - 14874949
Alignment:
Q  34 gtaacatcagcatcagcttcaataaacaaaataccttcatcattacaatcaaccataagtttcctactaggaccttcccttaatctacctgcaaatggat 133  Q
    |||||||| |||||||||||||||||||||| ||||||  || | ||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  14874795 gtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttcccttaacctacctgcaaatggat 14874894  T
Q  134 aataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtcttt 188  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  14874895 aataaaacacaagtgtttttgctaatgcttttctaataacatcaacaggatcttt 14874949  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 36307234 - 36307158
Alignment:
Q  19 ccaaattgttcaagagtaacatcagcatcagcttcaataaacaaaataccttcatcattacaatcaaccataagttt 95  Q
    |||||||||||||| || ||||||||||| || ||||| |||| || ||||||  |||||||||| ||||| |||||    
T  36307234 ccaaattgttcaagtgttacatcagcatctgcctcaatgaacataacaccttctccattacaatccaccatgagttt 36307158  T

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Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 14 - 188
Target Start/End: Complemental strand, 14857656 - 14857482
Alignment:
Q  14 catcaccaaattgttcaagagtaacatcagcatcagcttcaataaacaaaataccttcatcattacaatcaaccataagtttcctactaggaccttccct 113  Q
    |||||||||||| ||  | | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||    
T  14857656 catcaccaaattctttcaaactaacatcagcatcagcttcaataaacaaaataccttcatcattacaatctaccataagcttcctaccaggaccttccct 14857557  T
Q  114 taatctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtcttt 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14857556 taatctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtcttt 14857482  T

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Target: scaffold0042 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 14 - 188
Target Start/End: Original strand, 91731 - 91905
Alignment:
Q  14 catcaccaaattgttcaagagtaacatcagcatcagcttcaataaacaaaataccttcatcattacaatcaaccataagtttcctactaggaccttccct 113  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||  || |||||||||||||||||||||| |  |||||||||||    
T  91731 catcaccaaattgtttaagagtaacatcagcatcagcttcaataaacaaaacaccttctccagtacaatcaaccataagtttcctgccgggaccttccct 91830  T
Q  114 taatctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtcttt 188  Q
     || |||||||| |||||||||||||||||||| ||||| || |  ||||||||||||| | |||||||||||||    
T  91831 caacctacctgccaatggataataaaacacaagcgttttcgcaagggcttttctaataacaacaacagggtcttt 91905  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 142 - 188
Target Start/End: Original strand, 33003102 - 33003148
Alignment:
Q  142 acaagtgtttttgctaatgcttttctaataatatcaacagggtcttt 188  Q
    |||||||||||||| | |||||||||||||| |||||||||||||||    
T  33003102 acaagtgtttttgcaattgcttttctaataacatcaacagggtcttt 33003148  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 47240904 - 47240829
Alignment:
Q  14 catcaccaaattgttcaagagtaacatcagcatcagcttcaataaacaaaataccttcatcattacaatcaaccat 89  Q
    ||||||||||||| ||||| || |||||||| ||||||||||| ||||  | ||||||| || ||||||| |||||    
T  47240904 catcaccaaattgatcaagtgttacatcagcttcagcttcaatgaacatgacaccttcaccagtacaatccaccat 47240829  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 47296289 - 47296364
Alignment:
Q  14 catcaccaaattgttcaagagtaacatcagcatcagcttcaataaacaaaataccttcatcattacaatcaaccat 89  Q
    ||||||||||||| ||||| || |||||||| ||||||||||| ||||  | ||||||| || ||||||| |||||    
T  47296289 catcaccaaattgatcaagtgttacatcagcttcagcttcaatgaacatgacaccttcaccagtacaatccaccat 47296364  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 35368856 - 35368810
Alignment:
Q  142 acaagtgtttttgctaatgcttttctaataatatcaacagggtcttt 188  Q
    |||||||||||||| | |||||||||||||| ||||||| |||||||    
T  35368856 acaagtgtttttgcaattgcttttctaataacatcaacaaggtcttt 35368810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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